Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
CLCF1Q9UBD9 AC231657.2-201ENST00000624556 255 ntBASIC18.89■□□□□ 0.61
CLCF1Q9UBD9 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLCF1Q9UBD9 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CLCF1Q9UBD9 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.89■□□□□ 0.61
CLCF1Q9UBD9 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.89■□□□□ 0.61
CLCF1Q9UBD9 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLCF1Q9UBD9 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CLCF1Q9UBD9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CLCF1Q9UBD9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.89■□□□□ 0.61
CLCF1Q9UBD9 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLCF1Q9UBD9 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CLCF1Q9UBD9 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 AC003102.1-202ENST00000563394 1796 ntBASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 HLA-L-209ENST00000420110 1011 ntBASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.88■□□□□ 0.61
CLCF1Q9UBD9 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 AC008175.2-201ENST00000612840 297 ntBASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 AC010536.3-201ENST00000620306 533 ntBASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLCF1Q9UBD9 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 SLC7A5P2-201ENST00000553010 536 ntBASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLCF1Q9UBD9 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 GALC-202ENST00000393568 2054 ntTSL 2 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 POU5F1P4-201ENST00000413175 1085 ntBASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 AC007322.1-201ENST00000426983 750 ntBASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.85■□□□□ 0.61
CLCF1Q9UBD9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 CNN2P6-201ENST00000439038 900 ntBASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms