Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
USP42Q9H9J4 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
USP42Q9H9J4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC27.11■■□□□ 1.93
USP42Q9H9J4 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC27.11■■□□□ 1.93
USP42Q9H9J4 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
USP42Q9H9J4 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
USP42Q9H9J4 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
USP42Q9H9J4 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC27.11■■□□□ 1.93
USP42Q9H9J4 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
USP42Q9H9J4 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
USP42Q9H9J4 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
USP42Q9H9J4 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC27.1■■□□□ 1.93
USP42Q9H9J4 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
USP42Q9H9J4 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
USP42Q9H9J4 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
USP42Q9H9J4 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
USP42Q9H9J4 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
USP42Q9H9J4 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC27.1■■□□□ 1.93
USP42Q9H9J4 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC27.1■■□□□ 1.93
USP42Q9H9J4 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC27.1■■□□□ 1.93
USP42Q9H9J4 AC069236.1-201ENST00000604339 616 ntBASIC27.1■■□□□ 1.93
USP42Q9H9J4 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
USP42Q9H9J4 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
USP42Q9H9J4 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC27.09■■□□□ 1.93
USP42Q9H9J4 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
USP42Q9H9J4 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
USP42Q9H9J4 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
USP42Q9H9J4 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC27.09■■□□□ 1.93
USP42Q9H9J4 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
USP42Q9H9J4 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
USP42Q9H9J4 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC27.09■■□□□ 1.93
USP42Q9H9J4 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
USP42Q9H9J4 AP006587.3-201ENST00000525742 1516 ntBASIC27.09■■□□□ 1.93
USP42Q9H9J4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
USP42Q9H9J4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC27.09■■□□□ 1.93
USP42Q9H9J4 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC27.09■■□□□ 1.93
USP42Q9H9J4 ADM-205ENST00000528544 586 ntTSL 2 BASIC27.09■■□□□ 1.93
USP42Q9H9J4 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC27.09■■□□□ 1.93
USP42Q9H9J4 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
USP42Q9H9J4 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC27.09■■□□□ 1.93
USP42Q9H9J4 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC27.09■■□□□ 1.93
USP42Q9H9J4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC27.08■■□□□ 1.93
USP42Q9H9J4 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC27.08■■□□□ 1.93
USP42Q9H9J4 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC27.08■■□□□ 1.93
USP42Q9H9J4 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
USP42Q9H9J4 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
USP42Q9H9J4 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC27.08■■□□□ 1.93
USP42Q9H9J4 BX276092.2-201ENST00000417668 665 ntBASIC27.08■■□□□ 1.93
USP42Q9H9J4 DUSP5P2-201ENST00000426873 1033 ntBASIC27.08■■□□□ 1.93
USP42Q9H9J4 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC27.08■■□□□ 1.93
USP42Q9H9J4 AL034346.1-201ENST00000568244 1277 ntBASIC27.08■■□□□ 1.93
USP42Q9H9J4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC27.08■■□□□ 1.93
USP42Q9H9J4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC27.08■■□□□ 1.93
USP42Q9H9J4 AC008694.1-202ENST00000636953 945 ntBASIC27.08■■□□□ 1.93
USP42Q9H9J4 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC27.08■■□□□ 1.93
USP42Q9H9J4 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC27.07■■□□□ 1.92
USP42Q9H9J4 OR7E47P-201ENST00000546390 1422 ntBASIC27.07■■□□□ 1.92
USP42Q9H9J4 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
USP42Q9H9J4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC27.07■■□□□ 1.92
USP42Q9H9J4 GCSHP5-201ENST00000443090 522 ntBASIC27.07■■□□□ 1.92
USP42Q9H9J4 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC27.07■■□□□ 1.92
USP42Q9H9J4 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
USP42Q9H9J4 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
USP42Q9H9J4 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC27.07■■□□□ 1.92
USP42Q9H9J4 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
USP42Q9H9J4 LINC00526-201ENST00000581067 1875 ntBASIC27.06■■□□□ 1.92
USP42Q9H9J4 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
USP42Q9H9J4 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
USP42Q9H9J4 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC27.06■■□□□ 1.92
USP42Q9H9J4 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC27.06■■□□□ 1.92
USP42Q9H9J4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
USP42Q9H9J4 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
USP42Q9H9J4 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
USP42Q9H9J4 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USP42Q9H9J4 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USP42Q9H9J4 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC27.05■■□□□ 1.92
USP42Q9H9J4 C1orf229-201ENST00000623686 2258 ntBASIC27.05■■□□□ 1.92
USP42Q9H9J4 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC27.05■■□□□ 1.92
USP42Q9H9J4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC27.05■■□□□ 1.92
USP42Q9H9J4 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USP42Q9H9J4 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC27.05■■□□□ 1.92
USP42Q9H9J4 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC27.05■■□□□ 1.92
USP42Q9H9J4 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC27.05■■□□□ 1.92
USP42Q9H9J4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC27.05■■□□□ 1.92
USP42Q9H9J4 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USP42Q9H9J4 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USP42Q9H9J4 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USP42Q9H9J4 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC27.05■■□□□ 1.92
USP42Q9H9J4 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USP42Q9H9J4 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
USP42Q9H9J4 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
USP42Q9H9J4 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
USP42Q9H9J4 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
USP42Q9H9J4 ESRRAP1-201ENST00000400596 1257 ntBASIC27.04■■□□□ 1.92
USP42Q9H9J4 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC27.04■■□□□ 1.92
USP42Q9H9J4 RHEB-204ENST00000472642 900 ntTSL 3 BASIC27.04■■□□□ 1.92
USP42Q9H9J4 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
USP42Q9H9J4 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
USP42Q9H9J4 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
USP42Q9H9J4 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC27.04■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 257.4 ms