Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 PTCHD3P2-201ENST00000424937 1205 ntBASIC12.55□□□□□ -0.4
LIMD2Q9BT23 AC006455.2-201ENST00000429931 906 ntBASIC12.55□□□□□ -0.4
LIMD2Q9BT23 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 MIR3181-201ENST00000578512 73 ntBASIC12.55□□□□□ -0.4
LIMD2Q9BT23 AL512631.2-201ENST00000604634 923 ntBASIC12.55□□□□□ -0.4
LIMD2Q9BT23 AC011298.3-201ENST00000615796 283 ntBASIC12.55□□□□□ -0.4
LIMD2Q9BT23 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 AC087742.1-201ENST00000575880 1738 ntBASIC12.54□□□□□ -0.4
LIMD2Q9BT23 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 GTSE1-AS1-202ENST00000623117 1518 ntBASIC12.54□□□□□ -0.4
LIMD2Q9BT23 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC12.54□□□□□ -0.4
LIMD2Q9BT23 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 HES6-206ENST00000409574 738 ntTSL 2 BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LIMD2Q9BT23 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.4
LIMD2Q9BT23 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 AC136469.2-201ENST00000623944 1028 ntBASIC12.52□□□□□ -0.41
LIMD2Q9BT23 AL031602.1-201ENST00000633169 911 ntBASIC12.52□□□□□ -0.41
LIMD2Q9BT23 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms