Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
SHROOM3Q8TF72 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.7■■□□□ 1.07
SHROOM3Q8TF72 AC123595.1-201ENST00000440769 1046 ntBASIC21.7■■□□□ 1.07
SHROOM3Q8TF72 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.7■■□□□ 1.07
SHROOM3Q8TF72 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.7■■□□□ 1.07
SHROOM3Q8TF72 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.7■■□□□ 1.07
SHROOM3Q8TF72 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.7■■□□□ 1.06
SHROOM3Q8TF72 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SHROOM3Q8TF72 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.7■■□□□ 1.06
SHROOM3Q8TF72 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SHROOM3Q8TF72 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
SHROOM3Q8TF72 CCDC92B-201ENST00000575506 885 ntBASIC21.7■■□□□ 1.06
SHROOM3Q8TF72 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHROOM3Q8TF72 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHROOM3Q8TF72 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 KRT87P-202ENST00000534226 1464 ntBASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHROOM3Q8TF72 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 TERF1P2-201ENST00000583350 1212 ntBASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 DUX4L2-201ENST00000561772 1275 ntBASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 DUX4L6-201ENST00000626483 1275 ntBASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 DUX4L1-201ENST00000627662 1275 ntBASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 DUX4L8-201ENST00000629013 1275 ntBASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 DUX4L3-201ENST00000630187 1275 ntBASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 DUX4L7-201ENST00000630678 1275 ntBASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 DUX4L5-201ENST00000630834 1275 ntBASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHROOM3Q8TF72 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHROOM3Q8TF72 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHROOM3Q8TF72 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHROOM3Q8TF72 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHROOM3Q8TF72 AC004911.1-201ENST00000416316 871 ntBASIC21.67■■□□□ 1.06
SHROOM3Q8TF72 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHROOM3Q8TF72 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.67■■□□□ 1.06
SHROOM3Q8TF72 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
SHROOM3Q8TF72 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHROOM3Q8TF72 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHROOM3Q8TF72 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHROOM3Q8TF72 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHROOM3Q8TF72 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHROOM3Q8TF72 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SHROOM3Q8TF72 AF106564.1-201ENST00000607058 2553 ntBASIC21.66■■□□□ 1.06
SHROOM3Q8TF72 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHROOM3Q8TF72 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.65■■□□□ 1.06
SHROOM3Q8TF72 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SHROOM3Q8TF72 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
SHROOM3Q8TF72 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SHROOM3Q8TF72 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.64■■□□□ 1.06
SHROOM3Q8TF72 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.64■■□□□ 1.06
SHROOM3Q8TF72 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHROOM3Q8TF72 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SHROOM3Q8TF72 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHROOM3Q8TF72 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.64■■□□□ 1.05
SHROOM3Q8TF72 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHROOM3Q8TF72 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms