Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PRPF39Q86UA1 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
PRPF39Q86UA1 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.94■■□□□ 1.1
PRPF39Q86UA1 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PRPF39Q86UA1 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 KRT18P14-201ENST00000534205 1250 ntBASIC21.93■■□□□ 1.1
PRPF39Q86UA1 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.93■■□□□ 1.1
PRPF39Q86UA1 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PRPF39Q86UA1 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 OR7E47P-201ENST00000546390 1422 ntBASIC21.92■■□□□ 1.1
PRPF39Q86UA1 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
PRPF39Q86UA1 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
PRPF39Q86UA1 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.9■■□□□ 1.1
PRPF39Q86UA1 TERF1P2-201ENST00000583350 1212 ntBASIC21.9■■□□□ 1.1
PRPF39Q86UA1 AL137784.2-201ENST00000607332 1000 ntBASIC21.9■■□□□ 1.1
PRPF39Q86UA1 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PRPF39Q86UA1 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PRPF39Q86UA1 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
PRPF39Q86UA1 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PRPF39Q86UA1 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PRPF39Q86UA1 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
PRPF39Q86UA1 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.89■■□□□ 1.1
PRPF39Q86UA1 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PRPF39Q86UA1 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.89■■□□□ 1.09
PRPF39Q86UA1 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
PRPF39Q86UA1 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PRPF39Q86UA1 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.89■■□□□ 1.09
PRPF39Q86UA1 NTF6G-201ENST00000591094 616 ntBASIC21.89■■□□□ 1.09
PRPF39Q86UA1 IKBKGP1-201ENST00000612193 1073 ntBASIC21.89■■□□□ 1.09
PRPF39Q86UA1 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PRPF39Q86UA1 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
PRPF39Q86UA1 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PRPF39Q86UA1 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PRPF39Q86UA1 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PRPF39Q86UA1 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.88■■□□□ 1.09
PRPF39Q86UA1 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PRPF39Q86UA1 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PRPF39Q86UA1 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PRPF39Q86UA1 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PRPF39Q86UA1 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PRPF39Q86UA1 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PRPF39Q86UA1 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PRPF39Q86UA1 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.88■■□□□ 1.09
PRPF39Q86UA1 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PRPF39Q86UA1 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PRPF39Q86UA1 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.88■■□□□ 1.09
PRPF39Q86UA1 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PRPF39Q86UA1 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PRPF39Q86UA1 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PRPF39Q86UA1 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PRPF39Q86UA1 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms