Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 AL050303.2-201ENST00000619798 666 ntBASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SH3RF1Q7Z6J0 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
SH3RF1Q7Z6J0 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
SH3RF1Q7Z6J0 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
SH3RF1Q7Z6J0 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.39■■□□□ 1.49
SH3RF1Q7Z6J0 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC24.39■■□□□ 1.49
SH3RF1Q7Z6J0 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC24.39■■□□□ 1.49
SH3RF1Q7Z6J0 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
SH3RF1Q7Z6J0 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC24.39■■□□□ 1.49
SH3RF1Q7Z6J0 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
SH3RF1Q7Z6J0 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
SH3RF1Q7Z6J0 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC24.39■■□□□ 1.49
SH3RF1Q7Z6J0 BID-212ENST00000614949 1988 ntTSL 5 BASIC24.38■■□□□ 1.49
SH3RF1Q7Z6J0 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SH3RF1Q7Z6J0 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SH3RF1Q7Z6J0 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SH3RF1Q7Z6J0 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SH3RF1Q7Z6J0 TESC-206ENST00000541210 936 ntTSL 3 BASIC24.38■■□□□ 1.49
SH3RF1Q7Z6J0 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SH3RF1Q7Z6J0 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
SH3RF1Q7Z6J0 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
SH3RF1Q7Z6J0 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC24.38■■□□□ 1.49
SH3RF1Q7Z6J0 AC007375.3-201ENST00000600936 2314 ntBASIC24.38■■□□□ 1.49
SH3RF1Q7Z6J0 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
SH3RF1Q7Z6J0 AC010542.4-201ENST00000563151 1910 ntBASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 KRT18P6-201ENST00000555540 1265 ntBASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 KLF13-207ENST00000560473 489 ntTSL 3 BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
SH3RF1Q7Z6J0 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SH3RF1Q7Z6J0 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SH3RF1Q7Z6J0 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SH3RF1Q7Z6J0 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SH3RF1Q7Z6J0 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC24.36■■□□□ 1.49
SH3RF1Q7Z6J0 KRT18P11-201ENST00000435214 1283 ntBASIC24.36■■□□□ 1.49
SH3RF1Q7Z6J0 MIR4651-201ENST00000582622 73 ntBASIC24.36■■□□□ 1.49
SH3RF1Q7Z6J0 MDK-213ENST00000617138 635 ntTSL 2 BASIC24.36■■□□□ 1.49
SH3RF1Q7Z6J0 FBXW4P1-201ENST00000426721 2239 ntBASIC24.36■■□□□ 1.49
SH3RF1Q7Z6J0 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC24.36■■□□□ 1.49
SH3RF1Q7Z6J0 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
SH3RF1Q7Z6J0 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 AC083906.2-201ENST00000511578 360 ntBASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 USP45-205ENST00000472914 1617 ntTSL 5 BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC24.35■■□□□ 1.49
SH3RF1Q7Z6J0 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 TSPY6P-201ENST00000448518 926 ntBASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 MFSD11-216ENST00000590393 1141 ntBASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 AL121832.2-201ENST00000610979 668 ntBASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 MAZ-216ENST00000616501 991 ntTSL 5 BASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SH3RF1Q7Z6J0 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC24.33■■□□□ 1.49
SH3RF1Q7Z6J0 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SH3RF1Q7Z6J0 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC24.33■■□□□ 1.49
SH3RF1Q7Z6J0 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SH3RF1Q7Z6J0 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SH3RF1Q7Z6J0 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms