Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HSPG2P98160 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HSPG2P98160 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HSPG2P98160 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
HSPG2P98160 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC13.36□□□□□ -0.27
HSPG2P98160 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC13.36□□□□□ -0.27
HSPG2P98160 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
HSPG2P98160 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HSPG2P98160 AL121894.2-201ENST00000602977 491 ntBASIC13.36□□□□□ -0.27
HSPG2P98160 H19-210ENST00000439725 1929 ntTSL 2 BASIC13.36□□□□□ -0.27
HSPG2P98160 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC13.35□□□□□ -0.27
HSPG2P98160 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HSPG2P98160 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HSPG2P98160 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HSPG2P98160 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HSPG2P98160 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
HSPG2P98160 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
HSPG2P98160 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC13.35□□□□□ -0.27
HSPG2P98160 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC13.35□□□□□ -0.27
HSPG2P98160 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HSPG2P98160 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC13.35□□□□□ -0.27
HSPG2P98160 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HSPG2P98160 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC13.34□□□□□ -0.27
HSPG2P98160 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC13.34□□□□□ -0.27
HSPG2P98160 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HSPG2P98160 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC13.34□□□□□ -0.27
HSPG2P98160 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC13.34□□□□□ -0.27
HSPG2P98160 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
HSPG2P98160 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC13.34□□□□□ -0.27
HSPG2P98160 NME6-213ENST00000451657 871 ntTSL 2 BASIC13.34□□□□□ -0.27
HSPG2P98160 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC13.34□□□□□ -0.27
HSPG2P98160 AL049637.2-201ENST00000641778 930 ntBASIC13.34□□□□□ -0.27
HSPG2P98160 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC13.34□□□□□ -0.27
HSPG2P98160 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 SOX15-203ENST00000570788 1093 ntBASIC13.34□□□□□ -0.27
HSPG2P98160 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC13.34□□□□□ -0.27
HSPG2P98160 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HSPG2P98160 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HSPG2P98160 LSM12P1-201ENST00000411836 588 ntBASIC13.33□□□□□ -0.28
HSPG2P98160 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HSPG2P98160 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC13.33□□□□□ -0.28
HSPG2P98160 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HSPG2P98160 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HSPG2P98160 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HSPG2P98160 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HSPG2P98160 AC022211.4-201ENST00000625094 2161 ntBASIC13.33□□□□□ -0.28
HSPG2P98160 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HSPG2P98160 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HSPG2P98160 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC13.33□□□□□ -0.28
HSPG2P98160 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC13.33□□□□□ -0.28
HSPG2P98160 AC092865.7-201ENST00000641832 219 ntBASIC13.33□□□□□ -0.28
HSPG2P98160 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HSPG2P98160 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HSPG2P98160 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HSPG2P98160 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC13.33□□□□□ -0.28
HSPG2P98160 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HSPG2P98160 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
HSPG2P98160 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC13.33□□□□□ -0.28
HSPG2P98160 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC13.33□□□□□ -0.28
HSPG2P98160 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HSPG2P98160 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
HSPG2P98160 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC13.32□□□□□ -0.28
HSPG2P98160 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
HSPG2P98160 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HSPG2P98160 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC13.32□□□□□ -0.28
HSPG2P98160 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HSPG2P98160 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HSPG2P98160 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC13.32□□□□□ -0.28
HSPG2P98160 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HSPG2P98160 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC13.32□□□□□ -0.28
HSPG2P98160 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC13.32□□□□□ -0.28
HSPG2P98160 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC13.32□□□□□ -0.28
HSPG2P98160 BRWD1-AS2-201ENST00000603064 1028 ntBASIC13.32□□□□□ -0.28
HSPG2P98160 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HSPG2P98160 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HSPG2P98160 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC13.32□□□□□ -0.28
HSPG2P98160 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HSPG2P98160 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
HSPG2P98160 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HSPG2P98160 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HSPG2P98160 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HSPG2P98160 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HSPG2P98160 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HSPG2P98160 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC13.31□□□□□ -0.28
HSPG2P98160 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC13.31□□□□□ -0.28
HSPG2P98160 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms