Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CIITAP33076 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CIITAP33076 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CIITAP33076 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.98■■□□□ 1.43
CIITAP33076 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC23.98■■□□□ 1.43
CIITAP33076 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC23.98■■□□□ 1.43
CIITAP33076 AL137784.2-201ENST00000607332 1000 ntBASIC23.98■■□□□ 1.43
CIITAP33076 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
CIITAP33076 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.98■■□□□ 1.43
CIITAP33076 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CIITAP33076 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CIITAP33076 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CIITAP33076 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.98■■□□□ 1.43
CIITAP33076 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CIITAP33076 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CIITAP33076 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CIITAP33076 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
CIITAP33076 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CIITAP33076 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CIITAP33076 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CIITAP33076 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CIITAP33076 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CIITAP33076 NAA20-201ENST00000310450 920 ntTSL 2 BASIC23.97■■□□□ 1.43
CIITAP33076 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.97■■□□□ 1.43
CIITAP33076 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
CIITAP33076 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC23.97■■□□□ 1.43
CIITAP33076 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC23.97■■□□□ 1.43
CIITAP33076 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC23.97■■□□□ 1.43
CIITAP33076 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC23.97■■□□□ 1.43
CIITAP33076 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC23.97■■□□□ 1.43
CIITAP33076 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CIITAP33076 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CIITAP33076 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CIITAP33076 KRT18P11-201ENST00000435214 1283 ntBASIC23.96■■□□□ 1.43
CIITAP33076 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.96■■□□□ 1.43
CIITAP33076 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC23.96■■□□□ 1.43
CIITAP33076 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC23.96■■□□□ 1.43
CIITAP33076 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
CIITAP33076 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CIITAP33076 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.96■■□□□ 1.43
CIITAP33076 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CIITAP33076 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.96■■□□□ 1.43
CIITAP33076 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.95■■□□□ 1.43
CIITAP33076 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
CIITAP33076 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.95■■□□□ 1.43
CIITAP33076 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 AC016769.1-201ENST00000409132 1010 ntBASIC23.95■■□□□ 1.42
CIITAP33076 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC23.95■■□□□ 1.42
CIITAP33076 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC23.95■■□□□ 1.42
CIITAP33076 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.95■■□□□ 1.42
CIITAP33076 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC23.95■■□□□ 1.42
CIITAP33076 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
CIITAP33076 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CIITAP33076 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CIITAP33076 MYB-221ENST00000527615 2381 ntTSL 5 BASIC23.94■■□□□ 1.42
CIITAP33076 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
CIITAP33076 ME2-206ENST00000638410 2289 ntTSL 5 BASIC23.94■■□□□ 1.42
CIITAP33076 ME2-210ENST00000639255 2262 ntTSL 5 BASIC23.94■■□□□ 1.42
CIITAP33076 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CIITAP33076 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC23.94■■□□□ 1.42
CIITAP33076 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC23.94■■□□□ 1.42
CIITAP33076 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
CIITAP33076 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC23.94■■□□□ 1.42
CIITAP33076 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CIITAP33076 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CIITAP33076 GAS2L1P2-201ENST00000436355 1356 ntBASIC23.93■■□□□ 1.42
CIITAP33076 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CIITAP33076 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CIITAP33076 POU5F1P4-201ENST00000413175 1085 ntBASIC23.93■■□□□ 1.42
CIITAP33076 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
CIITAP33076 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC23.93■■□□□ 1.42
CIITAP33076 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CIITAP33076 SLC7A5P1-201ENST00000568957 537 ntBASIC23.93■■□□□ 1.42
CIITAP33076 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CIITAP33076 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CIITAP33076 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CIITAP33076 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CIITAP33076 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
CIITAP33076 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
CIITAP33076 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC23.93■■□□□ 1.42
CIITAP33076 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC23.93■■□□□ 1.42
CIITAP33076 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
CIITAP33076 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CIITAP33076 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
CIITAP33076 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CIITAP33076 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
CIITAP33076 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
CIITAP33076 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CIITAP33076 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms