Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
USF1P22415 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USF1P22415 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USF1P22415 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USF1P22415 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.92■□□□□ 0.46
USF1P22415 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USF1P22415 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USF1P22415 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC17.92■□□□□ 0.46
USF1P22415 PXK-203ENST00000383715 1756 ntTSL 5 BASIC17.92■□□□□ 0.46
USF1P22415 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC17.92■□□□□ 0.46
USF1P22415 CD99P1-205ENST00000527459 561 ntBASIC17.92■□□□□ 0.46
USF1P22415 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC17.92■□□□□ 0.46
USF1P22415 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USF1P22415 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
USF1P22415 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC17.92■□□□□ 0.46
USF1P22415 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
USF1P22415 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC17.92■□□□□ 0.46
USF1P22415 MYCNOS-205ENST00000641950 531 ntBASIC17.92■□□□□ 0.46
USF1P22415 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
USF1P22415 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USF1P22415 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USF1P22415 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USF1P22415 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
USF1P22415 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USF1P22415 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USF1P22415 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
USF1P22415 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
USF1P22415 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
USF1P22415 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USF1P22415 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.91■□□□□ 0.46
USF1P22415 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USF1P22415 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USF1P22415 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
USF1P22415 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC17.91■□□□□ 0.46
USF1P22415 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
USF1P22415 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
USF1P22415 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USF1P22415 FXN-202ENST00000396364 980 ntTSL 5 BASIC17.91■□□□□ 0.46
USF1P22415 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.91■□□□□ 0.46
USF1P22415 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.91■□□□□ 0.46
USF1P22415 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.91■□□□□ 0.46
USF1P22415 AC079089.2-201ENST00000531211 1277 ntBASIC17.91■□□□□ 0.46
USF1P22415 AC142086.2-201ENST00000569753 217 ntBASIC17.91■□□□□ 0.46
USF1P22415 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
USF1P22415 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
USF1P22415 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USF1P22415 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USF1P22415 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USF1P22415 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USF1P22415 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USF1P22415 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USF1P22415 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USF1P22415 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
USF1P22415 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
USF1P22415 SLC29A4P1-201ENST00000398760 971 ntBASIC17.9■□□□□ 0.46
USF1P22415 TSPY6P-201ENST00000448518 926 ntBASIC17.9■□□□□ 0.46
USF1P22415 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.9■□□□□ 0.46
USF1P22415 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.9■□□□□ 0.46
USF1P22415 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.9■□□□□ 0.46
USF1P22415 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.9■□□□□ 0.46
USF1P22415 AL050303.2-201ENST00000619798 666 ntBASIC17.9■□□□□ 0.46
USF1P22415 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.9■□□□□ 0.46
USF1P22415 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USF1P22415 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USF1P22415 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
USF1P22415 AC055733.4-201ENST00000638462 1354 ntBASIC17.9■□□□□ 0.46
USF1P22415 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USF1P22415 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USF1P22415 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
USF1P22415 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
USF1P22415 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
USF1P22415 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.46
USF1P22415 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USF1P22415 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USF1P22415 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USF1P22415 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.89■□□□□ 0.45
USF1P22415 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.89■□□□□ 0.45
USF1P22415 TMEM191A-211ENST00000637163 1067 ntBASIC17.89■□□□□ 0.45
USF1P22415 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.89■□□□□ 0.45
USF1P22415 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USF1P22415 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
USF1P22415 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
USF1P22415 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.88■□□□□ 0.45
USF1P22415 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USF1P22415 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.88■□□□□ 0.45
USF1P22415 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USF1P22415 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.88■□□□□ 0.45
USF1P22415 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.88■□□□□ 0.45
USF1P22415 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.88■□□□□ 0.45
USF1P22415 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USF1P22415 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.88■□□□□ 0.45
USF1P22415 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.88■□□□□ 0.45
USF1P22415 LINC01960-201ENST00000563759 1884 ntBASIC17.88■□□□□ 0.45
USF1P22415 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.88■□□□□ 0.45
USF1P22415 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USF1P22415 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USF1P22415 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
USF1P22415 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USF1P22415 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
USF1P22415 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms