Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH3P20585 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH3P20585 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
MSH3P20585 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH3P20585 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.1■□□□□ 0.97
MSH3P20585 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.1■□□□□ 0.97
MSH3P20585 AC079140.4-201ENST00000507448 529 ntBASIC21.1■□□□□ 0.97
MSH3P20585 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.1■□□□□ 0.97
MSH3P20585 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH3P20585 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
MSH3P20585 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH3P20585 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH3P20585 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.09■□□□□ 0.97
MSH3P20585 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.09■□□□□ 0.97
MSH3P20585 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH3P20585 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH3P20585 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH3P20585 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSH3P20585 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.09■□□□□ 0.97
MSH3P20585 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSH3P20585 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH3P20585 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.09■□□□□ 0.97
MSH3P20585 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH3P20585 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.09■□□□□ 0.97
MSH3P20585 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSH3P20585 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSH3P20585 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSH3P20585 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSH3P20585 AC026471.6-201ENST00000622954 1905 ntBASIC21.08■□□□□ 0.97
MSH3P20585 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
MSH3P20585 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.08■□□□□ 0.97
MSH3P20585 AC034268.1-201ENST00000441047 882 ntBASIC21.08■□□□□ 0.97
MSH3P20585 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.97
MSH3P20585 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.08■□□□□ 0.97
MSH3P20585 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
MSH3P20585 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
MSH3P20585 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
MSH3P20585 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.08■□□□□ 0.97
MSH3P20585 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.08■□□□□ 0.97
MSH3P20585 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
MSH3P20585 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSH3P20585 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
MSH3P20585 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH3P20585 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH3P20585 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH3P20585 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.07■□□□□ 0.96
MSH3P20585 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH3P20585 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH3P20585 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH3P20585 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.07■□□□□ 0.96
MSH3P20585 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.07■□□□□ 0.96
MSH3P20585 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.07■□□□□ 0.96
MSH3P20585 MIR5787-201ENST00000611784 55 ntBASIC21.07■□□□□ 0.96
MSH3P20585 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.07■□□□□ 0.96
MSH3P20585 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH3P20585 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
MSH3P20585 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH3P20585 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
MSH3P20585 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MSH3P20585 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.06■□□□□ 0.96
MSH3P20585 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH3P20585 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH3P20585 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.06■□□□□ 0.96
MSH3P20585 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
MSH3P20585 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MSH3P20585 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH3P20585 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.06■□□□□ 0.96
MSH3P20585 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH3P20585 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.06■□□□□ 0.96
MSH3P20585 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
MSH3P20585 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH3P20585 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH3P20585 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH3P20585 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH3P20585 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH3P20585 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH3P20585 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
MSH3P20585 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.05■□□□□ 0.96
MSH3P20585 DUX4L2-201ENST00000561772 1275 ntBASIC21.05■□□□□ 0.96
MSH3P20585 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH3P20585 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.05■□□□□ 0.96
MSH3P20585 DUX4L6-201ENST00000626483 1275 ntBASIC21.05■□□□□ 0.96
MSH3P20585 DUX4L1-201ENST00000627662 1275 ntBASIC21.05■□□□□ 0.96
MSH3P20585 DUX4L8-201ENST00000629013 1275 ntBASIC21.05■□□□□ 0.96
MSH3P20585 DUX4L3-201ENST00000630187 1275 ntBASIC21.05■□□□□ 0.96
MSH3P20585 DUX4L7-201ENST00000630678 1275 ntBASIC21.05■□□□□ 0.96
MSH3P20585 DUX4L5-201ENST00000630834 1275 ntBASIC21.05■□□□□ 0.96
MSH3P20585 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH3P20585 AC003102.1-202ENST00000563394 1796 ntBASIC21.05■□□□□ 0.96
MSH3P20585 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
MSH3P20585 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
MSH3P20585 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH3P20585 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH3P20585 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.04■□□□□ 0.96
MSH3P20585 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
MSH3P20585 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
MSH3P20585 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH3P20585 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH3P20585 AC010542.4-201ENST00000563151 1910 ntBASIC21.04■□□□□ 0.96
MSH3P20585 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms