Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
PCNAP12004 SMUG1P1-201ENST00000590640 811 ntBASIC20.6■□□□□ 0.89
PCNAP12004 AL031432.3-201ENST00000607698 485 ntBASIC20.6■□□□□ 0.89
PCNAP12004 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCNAP12004 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
PCNAP12004 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
PCNAP12004 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCNAP12004 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCNAP12004 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCNAP12004 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCNAP12004 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.59■□□□□ 0.89
PCNAP12004 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.59■□□□□ 0.89
PCNAP12004 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCNAP12004 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.59■□□□□ 0.89
PCNAP12004 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PCNAP12004 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PCNAP12004 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCNAP12004 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.59■□□□□ 0.89
PCNAP12004 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.59■□□□□ 0.89
PCNAP12004 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.59■□□□□ 0.89
PCNAP12004 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.59■□□□□ 0.89
PCNAP12004 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.59■□□□□ 0.89
PCNAP12004 AL136967.2-201ENST00000623968 743 ntBASIC20.59■□□□□ 0.89
PCNAP12004 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
PCNAP12004 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCNAP12004 SLC25A24-204ENST00000569674 2357 ntBASIC20.59■□□□□ 0.89
PCNAP12004 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCNAP12004 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCNAP12004 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PCNAP12004 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
PCNAP12004 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.59■□□□□ 0.89
PCNAP12004 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
PCNAP12004 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCNAP12004 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.58■□□□□ 0.89
PCNAP12004 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCNAP12004 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCNAP12004 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PCNAP12004 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
PCNAP12004 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
PCNAP12004 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PCNAP12004 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.58■□□□□ 0.89
PCNAP12004 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PCNAP12004 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.58■□□□□ 0.88
PCNAP12004 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCNAP12004 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.58■□□□□ 0.88
PCNAP12004 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCNAP12004 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.57■□□□□ 0.88
PCNAP12004 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCNAP12004 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCNAP12004 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCNAP12004 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.57■□□□□ 0.88
PCNAP12004 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.57■□□□□ 0.88
PCNAP12004 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCNAP12004 AC142381.2-201ENST00000566120 298 ntBASIC20.57■□□□□ 0.88
PCNAP12004 AC105233.4-201ENST00000642045 216 ntBASIC20.57■□□□□ 0.88
PCNAP12004 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCNAP12004 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCNAP12004 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.57■□□□□ 0.88
PCNAP12004 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCNAP12004 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCNAP12004 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCNAP12004 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCNAP12004 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.56■□□□□ 0.88
PCNAP12004 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.56■□□□□ 0.88
PCNAP12004 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PCNAP12004 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCNAP12004 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCNAP12004 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCNAP12004 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.56■□□□□ 0.88
PCNAP12004 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.56■□□□□ 0.88
PCNAP12004 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCNAP12004 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCNAP12004 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCNAP12004 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCNAP12004 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCNAP12004 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.55■□□□□ 0.88
PCNAP12004 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCNAP12004 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCNAP12004 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCNAP12004 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.55■□□□□ 0.88
PCNAP12004 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCNAP12004 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.55■□□□□ 0.88
PCNAP12004 SUDS3P1-201ENST00000505831 966 ntBASIC20.55■□□□□ 0.88
PCNAP12004 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCNAP12004 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCNAP12004 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.55■□□□□ 0.88
PCNAP12004 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCNAP12004 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCNAP12004 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCNAP12004 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
PCNAP12004 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.55■□□□□ 0.88
PCNAP12004 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCNAP12004 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCNAP12004 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCNAP12004 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCNAP12004 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCNAP12004 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCNAP12004 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PCNAP12004 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.54■□□□□ 0.88
PCNAP12004 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms