Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC4P09017 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC4P09017 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC4P09017 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC4P09017 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC4P09017 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC4P09017 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC4P09017 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC4P09017 MIR663A-201ENST00000385250 93 ntBASIC20.82■□□□□ 0.92
HOXC4P09017 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC4P09017 HLA-L-209ENST00000420110 1011 ntBASIC20.82■□□□□ 0.92
HOXC4P09017 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXC4P09017 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXC4P09017 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
HOXC4P09017 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.82■□□□□ 0.92
HOXC4P09017 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.82■□□□□ 0.92
HOXC4P09017 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC4P09017 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
HOXC4P09017 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
HOXC4P09017 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC4P09017 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
HOXC4P09017 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC4P09017 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC4P09017 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC4P09017 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXC4P09017 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC4P09017 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC4P09017 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC4P09017 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC4P09017 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXC4P09017 AC005181.1-201ENST00000604782 1256 ntBASIC20.81■□□□□ 0.92
HOXC4P09017 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC4P09017 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC4P09017 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC4P09017 FAM99A-202ENST00000538190 1989 ntBASIC20.81■□□□□ 0.92
HOXC4P09017 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC4P09017 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
HOXC4P09017 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC4P09017 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
HOXC4P09017 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC4P09017 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
HOXC4P09017 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC4P09017 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXC4P09017 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXC4P09017 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC4P09017 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC4P09017 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC4P09017 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
HOXC4P09017 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC4P09017 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC4P09017 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
HOXC4P09017 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC4P09017 GPX1P1-201ENST00000388829 606 ntBASIC20.79■□□□□ 0.92
HOXC4P09017 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.79■□□□□ 0.92
HOXC4P09017 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.79■□□□□ 0.92
HOXC4P09017 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC4P09017 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC4P09017 AC243732.1-201ENST00000612648 864 ntBASIC20.79■□□□□ 0.92
HOXC4P09017 AL050303.2-201ENST00000619798 666 ntBASIC20.79■□□□□ 0.92
HOXC4P09017 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC4P09017 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC4P09017 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
HOXC4P09017 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC4P09017 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXC4P09017 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXC4P09017 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
HOXC4P09017 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC4P09017 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.78■□□□□ 0.92
HOXC4P09017 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC4P09017 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXC4P09017 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC4P09017 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXC4P09017 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.78■□□□□ 0.92
HOXC4P09017 AC104771.1-201ENST00000603335 964 ntBASIC20.78■□□□□ 0.92
HOXC4P09017 AL121832.2-201ENST00000610979 668 ntBASIC20.78■□□□□ 0.92
HOXC4P09017 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC4P09017 AC026471.6-201ENST00000622954 1905 ntBASIC20.78■□□□□ 0.92
HOXC4P09017 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC4P09017 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC4P09017 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC4P09017 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC4P09017 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC4P09017 AC061975.6-201ENST00000579045 1553 ntBASIC20.77■□□□□ 0.92
HOXC4P09017 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.77■□□□□ 0.92
HOXC4P09017 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC4P09017 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC4P09017 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
HOXC4P09017 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
HOXC4P09017 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.77■□□□□ 0.92
HOXC4P09017 AC133552.2-202ENST00000575694 574 ntBASIC20.77■□□□□ 0.92
HOXC4P09017 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
HOXC4P09017 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC4P09017 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC4P09017 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC4P09017 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.76■□□□□ 0.91
HOXC4P09017 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC4P09017 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC4P09017 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.76■□□□□ 0.91
HOXC4P09017 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC4P09017 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms