Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
HLA-DOAP06340 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
HLA-DOAP06340 RARG-204ENST00000543726 1779 ntTSL 2 BASIC25.09■■□□□ 1.61
HLA-DOAP06340 AF201337.1-201ENST00000520239 748 ntBASIC25.09■■□□□ 1.61
HLA-DOAP06340 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC25.09■■□□□ 1.61
HLA-DOAP06340 AC142086.2-201ENST00000569753 217 ntBASIC25.09■■□□□ 1.61
HLA-DOAP06340 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC25.09■■□□□ 1.61
HLA-DOAP06340 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC25.09■■□□□ 1.61
HLA-DOAP06340 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC25.09■■□□□ 1.61
HLA-DOAP06340 AC080038.3-201ENST00000623346 1952 ntBASIC25.09■■□□□ 1.61
HLA-DOAP06340 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HLA-DOAP06340 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HLA-DOAP06340 AC003102.1-202ENST00000563394 1796 ntBASIC25.08■■□□□ 1.61
HLA-DOAP06340 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
HLA-DOAP06340 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
HLA-DOAP06340 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
HLA-DOAP06340 GUSBP6-202ENST00000438529 1198 ntBASIC25.08■■□□□ 1.61
HLA-DOAP06340 AC007322.4-201ENST00000509611 723 ntBASIC25.08■■□□□ 1.61
HLA-DOAP06340 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC25.08■■□□□ 1.61
HLA-DOAP06340 AC133552.2-202ENST00000575694 574 ntBASIC25.08■■□□□ 1.61
HLA-DOAP06340 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HLA-DOAP06340 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC25.08■■□□□ 1.61
HLA-DOAP06340 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
HLA-DOAP06340 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
HLA-DOAP06340 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC25.08■■□□□ 1.6
HLA-DOAP06340 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
HLA-DOAP06340 C9orf163-202ENST00000624034 2573 ntBASIC25.07■■□□□ 1.6
HLA-DOAP06340 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
HLA-DOAP06340 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
HLA-DOAP06340 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
HLA-DOAP06340 KRT16P2-201ENST00000414673 1423 ntBASIC25.07■■□□□ 1.6
HLA-DOAP06340 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC25.07■■□□□ 1.6
HLA-DOAP06340 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
HLA-DOAP06340 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
HLA-DOAP06340 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC25.07■■□□□ 1.6
HLA-DOAP06340 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC25.07■■□□□ 1.6
HLA-DOAP06340 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC25.07■■□□□ 1.6
HLA-DOAP06340 AC105036.2-201ENST00000569468 176 ntBASIC25.07■■□□□ 1.6
HLA-DOAP06340 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
HLA-DOAP06340 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
HLA-DOAP06340 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
HLA-DOAP06340 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC25.06■■□□□ 1.6
HLA-DOAP06340 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HLA-DOAP06340 BET1L-204ENST00000410108 637 ntTSL 3 BASIC25.06■■□□□ 1.6
HLA-DOAP06340 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC25.06■■□□□ 1.6
HLA-DOAP06340 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC25.06■■□□□ 1.6
HLA-DOAP06340 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
HLA-DOAP06340 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC25.06■■□□□ 1.6
HLA-DOAP06340 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HLA-DOAP06340 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HLA-DOAP06340 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC25.06■■□□□ 1.6
HLA-DOAP06340 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
HLA-DOAP06340 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC25.05■■□□□ 1.6
HLA-DOAP06340 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC25.05■■□□□ 1.6
HLA-DOAP06340 AC068338.2-201ENST00000563278 1430 ntBASIC25.05■■□□□ 1.6
HLA-DOAP06340 CYP2T1P-201ENST00000432607 1285 ntBASIC25.05■■□□□ 1.6
HLA-DOAP06340 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
HLA-DOAP06340 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC25.05■■□□□ 1.6
HLA-DOAP06340 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
HLA-DOAP06340 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC25.05■■□□□ 1.6
HLA-DOAP06340 PFKL-212ENST00000628044 129 ntTSL 3 BASIC25.05■■□□□ 1.6
HLA-DOAP06340 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
HLA-DOAP06340 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC25.04■■□□□ 1.6
HLA-DOAP06340 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
HLA-DOAP06340 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
HLA-DOAP06340 APTR-205ENST00000447009 902 ntTSL 2 BASIC25.04■■□□□ 1.6
HLA-DOAP06340 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC25.04■■□□□ 1.6
HLA-DOAP06340 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC25.04■■□□□ 1.6
HLA-DOAP06340 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
HLA-DOAP06340 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
HLA-DOAP06340 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
HLA-DOAP06340 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
HLA-DOAP06340 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC25.04■■□□□ 1.6
HLA-DOAP06340 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC25.04■■□□□ 1.6
HLA-DOAP06340 ME2-208ENST00000638937 2471 ntTSL 5 BASIC25.04■■□□□ 1.6
HLA-DOAP06340 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.6
HLA-DOAP06340 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC25.03■■□□□ 1.6
HLA-DOAP06340 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
HLA-DOAP06340 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
HLA-DOAP06340 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
HLA-DOAP06340 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
HLA-DOAP06340 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
HLA-DOAP06340 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC25.03■■□□□ 1.6
HLA-DOAP06340 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC25.03■■□□□ 1.6
HLA-DOAP06340 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
HLA-DOAP06340 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
HLA-DOAP06340 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
HLA-DOAP06340 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
HLA-DOAP06340 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
HLA-DOAP06340 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
HLA-DOAP06340 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
HLA-DOAP06340 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
HLA-DOAP06340 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
HLA-DOAP06340 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
HLA-DOAP06340 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
HLA-DOAP06340 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
HLA-DOAP06340 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC25.02■■□□□ 1.6
HLA-DOAP06340 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
HLA-DOAP06340 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
HLA-DOAP06340 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms