Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RAF1P04049 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.14■□□□□ 0.65
RAF1P04049 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RAF1P04049 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RAF1P04049 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
RAF1P04049 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
RAF1P04049 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RAF1P04049 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.13■□□□□ 0.65
RAF1P04049 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RAF1P04049 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
RAF1P04049 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RAF1P04049 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.13■□□□□ 0.65
RAF1P04049 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.13■□□□□ 0.65
RAF1P04049 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RAF1P04049 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.13■□□□□ 0.65
RAF1P04049 AC026310.3-201ENST00000625186 2373 ntBASIC19.12■□□□□ 0.65
RAF1P04049 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
RAF1P04049 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RAF1P04049 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.12■□□□□ 0.65
RAF1P04049 LINC01960-201ENST00000563759 1884 ntBASIC19.12■□□□□ 0.65
RAF1P04049 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RAF1P04049 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RAF1P04049 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RAF1P04049 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
RAF1P04049 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
RAF1P04049 HLA-L-209ENST00000420110 1011 ntBASIC19.12■□□□□ 0.65
RAF1P04049 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RAF1P04049 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
RAF1P04049 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RAF1P04049 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.12■□□□□ 0.65
RAF1P04049 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
RAF1P04049 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
RAF1P04049 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
RAF1P04049 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.11■□□□□ 0.65
RAF1P04049 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.11■□□□□ 0.65
RAF1P04049 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.11■□□□□ 0.65
RAF1P04049 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RAF1P04049 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.11■□□□□ 0.65
RAF1P04049 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RAF1P04049 AC010542.4-201ENST00000563151 1910 ntBASIC19.11■□□□□ 0.65
RAF1P04049 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
RAF1P04049 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RAF1P04049 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.11■□□□□ 0.65
RAF1P04049 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
RAF1P04049 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RAF1P04049 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RAF1P04049 AC133637.1-201ENST00000624115 1537 ntBASIC19.1■□□□□ 0.65
RAF1P04049 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
RAF1P04049 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
RAF1P04049 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RAF1P04049 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.1■□□□□ 0.65
RAF1P04049 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RAF1P04049 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RAF1P04049 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RAF1P04049 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.1■□□□□ 0.65
RAF1P04049 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.1■□□□□ 0.65
RAF1P04049 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RAF1P04049 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
RAF1P04049 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RAF1P04049 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.1■□□□□ 0.65
RAF1P04049 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
RAF1P04049 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RAF1P04049 FAM99A-202ENST00000538190 1989 ntBASIC19.1■□□□□ 0.65
RAF1P04049 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RAF1P04049 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
RAF1P04049 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
RAF1P04049 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RAF1P04049 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
RAF1P04049 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RAF1P04049 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RAF1P04049 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RAF1P04049 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RAF1P04049 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
RAF1P04049 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.09■□□□□ 0.65
RAF1P04049 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.09■□□□□ 0.65
RAF1P04049 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.09■□□□□ 0.65
RAF1P04049 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
RAF1P04049 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.09■□□□□ 0.65
RAF1P04049 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.09■□□□□ 0.65
RAF1P04049 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.09■□□□□ 0.65
RAF1P04049 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
RAF1P04049 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
RAF1P04049 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.09■□□□□ 0.65
RAF1P04049 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
RAF1P04049 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RAF1P04049 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
RAF1P04049 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.08■□□□□ 0.65
RAF1P04049 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RAF1P04049 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
RAF1P04049 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RAF1P04049 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.08■□□□□ 0.65
RAF1P04049 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
RAF1P04049 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.08■□□□□ 0.64
RAF1P04049 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RAF1P04049 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RAF1P04049 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.08■□□□□ 0.64
RAF1P04049 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.08■□□□□ 0.64
RAF1P04049 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
RAF1P04049 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.08■□□□□ 0.64
RAF1P04049 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms