Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A1P02462 PPP1R14BP2-201ENST00000426284 444 ntBASIC26.22■■□□□ 1.79
COL4A1P02462 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL4A1P02462 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL4A1P02462 AC003102.1-202ENST00000563394 1796 ntBASIC26.22■■□□□ 1.79
COL4A1P02462 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL4A1P02462 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL4A1P02462 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL4A1P02462 RGMA-211ENST00000557420 989 ntTSL 3 BASIC26.22■■□□□ 1.79
COL4A1P02462 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
COL4A1P02462 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A1P02462 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A1P02462 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC26.21■■□□□ 1.79
COL4A1P02462 MYC-209ENST00000641252 345 ntBASIC26.21■■□□□ 1.79
COL4A1P02462 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A1P02462 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC26.21■■□□□ 1.79
COL4A1P02462 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL4A1P02462 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC26.21■■□□□ 1.79
COL4A1P02462 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.79
COL4A1P02462 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC26.2■■□□□ 1.78
COL4A1P02462 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL4A1P02462 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC26.2■■□□□ 1.78
COL4A1P02462 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC26.2■■□□□ 1.78
COL4A1P02462 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC26.2■■□□□ 1.78
COL4A1P02462 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL4A1P02462 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL4A1P02462 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC26.19■■□□□ 1.78
COL4A1P02462 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC26.19■■□□□ 1.78
COL4A1P02462 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL4A1P02462 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC26.19■■□□□ 1.78
COL4A1P02462 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL4A1P02462 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC26.19■■□□□ 1.78
COL4A1P02462 AC008687.6-201ENST00000596318 630 ntBASIC26.19■■□□□ 1.78
COL4A1P02462 AC133041.1-202ENST00000642053 222 ntBASIC26.19■■□□□ 1.78
COL4A1P02462 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A1P02462 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC26.18■■□□□ 1.78
COL4A1P02462 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A1P02462 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A1P02462 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A1P02462 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC26.18■■□□□ 1.78
COL4A1P02462 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A1P02462 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
COL4A1P02462 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A1P02462 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A1P02462 CASK-201ENST00000378154 2494 ntTSL 5 BASIC26.17■■□□□ 1.78
COL4A1P02462 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC26.17■■□□□ 1.78
COL4A1P02462 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A1P02462 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A1P02462 RNA5SP413-201ENST00000516373 109 ntBASIC26.17■■□□□ 1.78
COL4A1P02462 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC26.17■■□□□ 1.78
COL4A1P02462 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A1P02462 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
COL4A1P02462 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A1P02462 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A1P02462 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A1P02462 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC26.16■■□□□ 1.78
COL4A1P02462 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL4A1P02462 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC26.16■■□□□ 1.78
COL4A1P02462 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC26.16■■□□□ 1.78
COL4A1P02462 AC098590.1-201ENST00000468126 897 ntBASIC26.16■■□□□ 1.78
COL4A1P02462 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC26.16■■□□□ 1.78
COL4A1P02462 OR10C1-204ENST00000622521 1039 ntBASIC26.16■■□□□ 1.78
COL4A1P02462 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC26.16■■□□□ 1.78
COL4A1P02462 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL4A1P02462 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC26.16■■□□□ 1.78
COL4A1P02462 RARG-204ENST00000543726 1779 ntTSL 2 BASIC26.16■■□□□ 1.78
COL4A1P02462 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL4A1P02462 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
COL4A1P02462 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC26.16■■□□□ 1.78
COL4A1P02462 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
COL4A1P02462 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
COL4A1P02462 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
COL4A1P02462 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
COL4A1P02462 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
COL4A1P02462 AC092118.2-201ENST00000613495 667 ntBASIC26.15■■□□□ 1.78
COL4A1P02462 C1orf229-201ENST00000623686 2258 ntBASIC26.15■■□□□ 1.78
COL4A1P02462 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
COL4A1P02462 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
COL4A1P02462 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
COL4A1P02462 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
COL4A1P02462 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC26.15■■□□□ 1.78
COL4A1P02462 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC26.15■■□□□ 1.78
COL4A1P02462 RARRES2P4-201ENST00000514074 484 ntBASIC26.15■■□□□ 1.78
COL4A1P02462 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC26.15■■□□□ 1.78
COL4A1P02462 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC26.15■■□□□ 1.78
COL4A1P02462 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
COL4A1P02462 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC26.15■■□□□ 1.78
COL4A1P02462 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL4A1P02462 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL4A1P02462 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL4A1P02462 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL4A1P02462 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL4A1P02462 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
COL4A1P02462 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC26.14■■□□□ 1.78
COL4A1P02462 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC26.14■■□□□ 1.78
COL4A1P02462 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
COL4A1P02462 KRT16P2-201ENST00000414673 1423 ntBASIC26.14■■□□□ 1.78
COL4A1P02462 BX276092.2-201ENST00000417668 665 ntBASIC26.14■■□□□ 1.78
COL4A1P02462 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC26.14■■□□□ 1.78
COL4A1P02462 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms