Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.37■□□□□ 0.85
LDLRP01130 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.37■□□□□ 0.85
LDLRP01130 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LDLRP01130 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.37■□□□□ 0.85
LDLRP01130 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDLRP01130 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
LDLRP01130 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDLRP01130 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LDLRP01130 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LDLRP01130 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.36■□□□□ 0.85
LDLRP01130 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDLRP01130 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDLRP01130 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDLRP01130 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDLRP01130 BX842568.3-201ENST00000418104 571 ntBASIC20.36■□□□□ 0.85
LDLRP01130 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.36■□□□□ 0.85
LDLRP01130 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LDLRP01130 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.36■□□□□ 0.85
LDLRP01130 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
LDLRP01130 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LDLRP01130 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDLRP01130 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.36■□□□□ 0.85
LDLRP01130 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.35■□□□□ 0.85
LDLRP01130 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
LDLRP01130 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDLRP01130 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LDLRP01130 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDLRP01130 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.35■□□□□ 0.85
LDLRP01130 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDLRP01130 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.35■□□□□ 0.85
LDLRP01130 DUX4L2-201ENST00000561772 1275 ntBASIC20.35■□□□□ 0.85
LDLRP01130 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.35■□□□□ 0.85
LDLRP01130 DUX4L6-201ENST00000626483 1275 ntBASIC20.35■□□□□ 0.85
LDLRP01130 DUX4L1-201ENST00000627662 1275 ntBASIC20.35■□□□□ 0.85
LDLRP01130 DUX4L8-201ENST00000629013 1275 ntBASIC20.35■□□□□ 0.85
LDLRP01130 DUX4L3-201ENST00000630187 1275 ntBASIC20.35■□□□□ 0.85
LDLRP01130 DUX4L7-201ENST00000630678 1275 ntBASIC20.35■□□□□ 0.85
LDLRP01130 DUX4L5-201ENST00000630834 1275 ntBASIC20.35■□□□□ 0.85
LDLRP01130 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDLRP01130 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDLRP01130 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
LDLRP01130 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
LDLRP01130 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDLRP01130 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDLRP01130 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDLRP01130 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.34■□□□□ 0.85
LDLRP01130 LINC01529-204ENST00000636474 1715 ntBASIC20.34■□□□□ 0.85
LDLRP01130 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.34■□□□□ 0.85
LDLRP01130 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
LDLRP01130 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDLRP01130 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
LDLRP01130 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDLRP01130 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDLRP01130 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDLRP01130 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LDLRP01130 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.33■□□□□ 0.85
LDLRP01130 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LDLRP01130 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
LDLRP01130 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LDLRP01130 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LDLRP01130 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
LDLRP01130 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.33■□□□□ 0.85
LDLRP01130 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
LDLRP01130 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LDLRP01130 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LDLRP01130 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
LDLRP01130 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LDLRP01130 Z98882.1-201ENST00000622160 2253 ntBASIC20.32■□□□□ 0.84
LDLRP01130 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.32■□□□□ 0.84
LDLRP01130 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.32■□□□□ 0.84
LDLRP01130 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.32■□□□□ 0.84
LDLRP01130 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.32■□□□□ 0.84
LDLRP01130 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LDLRP01130 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.32■□□□□ 0.84
LDLRP01130 AL121603.2-201ENST00000557373 2117 ntBASIC20.32■□□□□ 0.84
LDLRP01130 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDLRP01130 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDLRP01130 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDLRP01130 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDLRP01130 AC009102.2-201ENST00000606772 1639 ntBASIC20.31■□□□□ 0.84
LDLRP01130 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.31■□□□□ 0.84
LDLRP01130 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.31■□□□□ 0.84
LDLRP01130 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LDLRP01130 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDLRP01130 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LDLRP01130 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.31■□□□□ 0.84
LDLRP01130 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
LDLRP01130 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms