Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
HOXC11O43248 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.7■■□□□ 1.06
HOXC11O43248 SLC29A4P1-201ENST00000398760 971 ntBASIC21.7■■□□□ 1.06
HOXC11O43248 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
HOXC11O43248 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.7■■□□□ 1.06
HOXC11O43248 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.7■■□□□ 1.06
HOXC11O43248 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HOXC11O43248 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.7■■□□□ 1.06
HOXC11O43248 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
HOXC11O43248 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HOXC11O43248 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.7■■□□□ 1.06
HOXC11O43248 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
HOXC11O43248 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC11O43248 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC11O43248 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC11O43248 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC11O43248 AC127496.7-201ENST00000625110 1798 ntBASIC21.69■■□□□ 1.06
HOXC11O43248 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
HOXC11O43248 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.69■■□□□ 1.06
HOXC11O43248 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC11O43248 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.69■■□□□ 1.06
HOXC11O43248 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.69■■□□□ 1.06
HOXC11O43248 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.69■■□□□ 1.06
HOXC11O43248 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC11O43248 AC105036.2-201ENST00000569468 176 ntBASIC21.69■■□□□ 1.06
HOXC11O43248 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.69■■□□□ 1.06
HOXC11O43248 KRT16P2-201ENST00000414673 1423 ntBASIC21.69■■□□□ 1.06
HOXC11O43248 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.69■■□□□ 1.06
HOXC11O43248 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC11O43248 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HOXC11O43248 AC092053.2-201ENST00000640557 1818 ntBASIC21.69■■□□□ 1.06
HOXC11O43248 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
HOXC11O43248 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.68■■□□□ 1.06
HOXC11O43248 CLDN5-201ENST00000403084 2357 ntBASIC21.68■■□□□ 1.06
HOXC11O43248 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
HOXC11O43248 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HOXC11O43248 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HOXC11O43248 CYP2T1P-201ENST00000432607 1285 ntBASIC21.68■■□□□ 1.06
HOXC11O43248 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.68■■□□□ 1.06
HOXC11O43248 AL138781.1-201ENST00000566567 1274 ntBASIC21.68■■□□□ 1.06
HOXC11O43248 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.68■■□□□ 1.06
HOXC11O43248 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.68■■□□□ 1.06
HOXC11O43248 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HOXC11O43248 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HOXC11O43248 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HOXC11O43248 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
HOXC11O43248 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.68■■□□□ 1.06
HOXC11O43248 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.68■■□□□ 1.06
HOXC11O43248 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HOXC11O43248 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HOXC11O43248 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.68■■□□□ 1.06
HOXC11O43248 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HOXC11O43248 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
HOXC11O43248 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
HOXC11O43248 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HOXC11O43248 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.67■■□□□ 1.06
HOXC11O43248 AC003102.1-202ENST00000563394 1796 ntBASIC21.67■■□□□ 1.06
HOXC11O43248 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.67■■□□□ 1.06
HOXC11O43248 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.67■■□□□ 1.06
HOXC11O43248 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HOXC11O43248 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.67■■□□□ 1.06
HOXC11O43248 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
HOXC11O43248 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HOXC11O43248 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.67■■□□□ 1.06
HOXC11O43248 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.67■■□□□ 1.06
HOXC11O43248 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.67■■□□□ 1.06
HOXC11O43248 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
HOXC11O43248 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
HOXC11O43248 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC11O43248 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC11O43248 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC11O43248 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC11O43248 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
HOXC11O43248 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.66■■□□□ 1.06
HOXC11O43248 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC11O43248 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
HOXC11O43248 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.66■■□□□ 1.06
HOXC11O43248 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.66■■□□□ 1.06
HOXC11O43248 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.66■■□□□ 1.06
HOXC11O43248 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.66■■□□□ 1.06
HOXC11O43248 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
HOXC11O43248 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC11O43248 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC11O43248 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC11O43248 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC11O43248 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC11O43248 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.66■■□□□ 1.06
HOXC11O43248 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HOXC11O43248 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.65■■□□□ 1.06
HOXC11O43248 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.65■■□□□ 1.06
HOXC11O43248 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
HOXC11O43248 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HOXC11O43248 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.65■■□□□ 1.06
HOXC11O43248 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HOXC11O43248 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HOXC11O43248 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
HOXC11O43248 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HOXC11O43248 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.65■■□□□ 1.06
HOXC11O43248 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HOXC11O43248 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms