Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A5A8TX70 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A5A8TX70 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A5A8TX70 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
COL6A5A8TX70 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A5A8TX70 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A5A8TX70 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A5A8TX70 AL591742.1-201ENST00000604433 565 ntBASIC16.73■□□□□ 0.27
COL6A5A8TX70 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL6A5A8TX70 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A5A8TX70 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A5A8TX70 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
COL6A5A8TX70 NAA20-201ENST00000310450 920 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A5A8TX70 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A5A8TX70 AC133681.1-201ENST00000465482 601 ntBASIC16.72■□□□□ 0.27
COL6A5A8TX70 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A5A8TX70 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A5A8TX70 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A5A8TX70 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A5A8TX70 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A5A8TX70 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A5A8TX70 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC16.72■□□□□ 0.27
COL6A5A8TX70 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A5A8TX70 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.72■□□□□ 0.27
COL6A5A8TX70 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
COL6A5A8TX70 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A5A8TX70 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A5A8TX70 KRT17P1-201ENST00000399211 1546 ntBASIC16.71■□□□□ 0.27
COL6A5A8TX70 RBM17P2-201ENST00000616397 1405 ntBASIC16.71■□□□□ 0.27
COL6A5A8TX70 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC16.71■□□□□ 0.27
COL6A5A8TX70 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A5A8TX70 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A5A8TX70 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC16.71■□□□□ 0.27
COL6A5A8TX70 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A5A8TX70 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A5A8TX70 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A5A8TX70 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC16.71■□□□□ 0.27
COL6A5A8TX70 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC16.71■□□□□ 0.27
COL6A5A8TX70 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL6A5A8TX70 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL6A5A8TX70 EI24-213ENST00000618552 1747 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A5A8TX70 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A5A8TX70 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A5A8TX70 LSM12P1-201ENST00000411836 588 ntBASIC16.7■□□□□ 0.26
COL6A5A8TX70 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A5A8TX70 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A5A8TX70 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC16.7■□□□□ 0.26
COL6A5A8TX70 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.7■□□□□ 0.26
COL6A5A8TX70 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.7■□□□□ 0.26
COL6A5A8TX70 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.7■□□□□ 0.26
COL6A5A8TX70 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.7■□□□□ 0.26
COL6A5A8TX70 AL121894.2-201ENST00000602977 491 ntBASIC16.7■□□□□ 0.26
COL6A5A8TX70 MTDHP1-201ENST00000605323 784 ntBASIC16.7■□□□□ 0.26
COL6A5A8TX70 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A5A8TX70 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
COL6A5A8TX70 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
COL6A5A8TX70 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A5A8TX70 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A5A8TX70 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A5A8TX70 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A5A8TX70 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A5A8TX70 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.7■□□□□ 0.26
COL6A5A8TX70 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A5A8TX70 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A5A8TX70 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A5A8TX70 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A5A8TX70 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A5A8TX70 SLC29A4P2-201ENST00000504749 1089 ntBASIC16.69■□□□□ 0.26
COL6A5A8TX70 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC16.69■□□□□ 0.26
COL6A5A8TX70 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
COL6A5A8TX70 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A5A8TX70 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A5A8TX70 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A5A8TX70 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A5A8TX70 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC16.69■□□□□ 0.26
COL6A5A8TX70 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A5A8TX70 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A5A8TX70 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.69■□□□□ 0.26
COL6A5A8TX70 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.69■□□□□ 0.26
COL6A5A8TX70 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.69■□□□□ 0.26
COL6A5A8TX70 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC16.69■□□□□ 0.26
COL6A5A8TX70 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A5A8TX70 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
COL6A5A8TX70 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A5A8TX70 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC16.68■□□□□ 0.26
COL6A5A8TX70 KRT18P57-201ENST00000443599 1254 ntBASIC16.68■□□□□ 0.26
COL6A5A8TX70 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC16.68■□□□□ 0.26
COL6A5A8TX70 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
COL6A5A8TX70 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
COL6A5A8TX70 FXN-202ENST00000396364 980 ntTSL 5 BASIC16.68■□□□□ 0.26
COL6A5A8TX70 AC113347.1-201ENST00000413321 391 ntBASIC16.68■□□□□ 0.26
COL6A5A8TX70 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
COL6A5A8TX70 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC16.68■□□□□ 0.26
COL6A5A8TX70 NME6-213ENST00000451657 871 ntTSL 2 BASIC16.68■□□□□ 0.26
COL6A5A8TX70 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A5A8TX70 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A5A8TX70 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A5A8TX70 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
COL6A5A8TX70 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A5A8TX70 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms