Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 AC104564.3-201ENST00000582367 638 ntBASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 SMUG1P1-201ENST00000590640 811 ntBASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 GRAMD4P4-201ENST00000613563 1115 ntBASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 AC110285.6-201ENST00000617652 491 ntBASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 PXK-203ENST00000383715 1756 ntTSL 5 BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 AC003102.1-202ENST00000563394 1796 ntBASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 ASL-203ENST00000380839 1765 ntTSL 5 BASIC17.74■□□□□ 0.43
TRAV39A0A0B4J263 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 AC133561.4-201ENST00000566112 224 ntBASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV39A0A0B4J263 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 NALT1-201ENST00000429224 738 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 AC106739.1-201ENST00000617035 715 ntBASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV39A0A0B4J263 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 IGHV3-19-201ENST00000521488 291 ntBASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 AL034346.1-201ENST00000568244 1277 ntBASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV39A0A0B4J263 TSPY26P-201ENST00000476365 1326 ntBASIC17.71■□□□□ 0.42
TRAV39A0A0B4J263 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.42
TRAV39A0A0B4J263 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms