Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.19■□□□□ 0.34
FOXA2Q9Y261 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA2Q9Y261 FEM1AP4-201ENST00000443167 1987 ntBASIC17.19■□□□□ 0.34
FOXA2Q9Y261 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 AP005435.1-201ENST00000529293 1178 ntBASIC17.18■□□□□ 0.34
FOXA2Q9Y261 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 AL031432.3-201ENST00000607698 485 ntBASIC17.18■□□□□ 0.34
FOXA2Q9Y261 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 MPST-208ENST00000628507 698 ntTSL 5 BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA2Q9Y261 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 RASA4CP-201ENST00000424092 1398 ntBASIC17.17■□□□□ 0.34
FOXA2Q9Y261 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA2Q9Y261 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
FOXA2Q9Y261 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA2Q9Y261 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
FOXA2Q9Y261 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA2Q9Y261 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA2Q9Y261 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.16■□□□□ 0.34
FOXA2Q9Y261 SUDS3P1-201ENST00000505831 966 ntBASIC17.16■□□□□ 0.34
FOXA2Q9Y261 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.16■□□□□ 0.34
FOXA2Q9Y261 AL136967.2-201ENST00000623968 743 ntBASIC17.16■□□□□ 0.34
FOXA2Q9Y261 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
FOXA2Q9Y261 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA2Q9Y261 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.16■□□□□ 0.34
FOXA2Q9Y261 OXCT2P1-201ENST00000447263 1535 ntBASIC17.16■□□□□ 0.34
FOXA2Q9Y261 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA2Q9Y261 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 AL034346.1-201ENST00000568244 1277 ntBASIC17.15■□□□□ 0.34
FOXA2Q9Y261 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA2Q9Y261 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
FOXA2Q9Y261 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.34
FOXA2Q9Y261 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC17.14■□□□□ 0.34
FOXA2Q9Y261 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA2Q9Y261 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
FOXA2Q9Y261 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA2Q9Y261 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA2Q9Y261 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA2Q9Y261 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA2Q9Y261 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
FOXA2Q9Y261 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA2Q9Y261 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms