Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 AC244015.2-201ENST00000616358 1861 ntBASIC27.33■■□□□ 1.97
SMC4Q9NTJ3 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SMC4Q9NTJ3 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SMC4Q9NTJ3 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SMC4Q9NTJ3 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
SMC4Q9NTJ3 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC27.32■■□□□ 1.96
SMC4Q9NTJ3 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC27.32■■□□□ 1.96
SMC4Q9NTJ3 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC27.32■■□□□ 1.96
SMC4Q9NTJ3 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC27.32■■□□□ 1.96
SMC4Q9NTJ3 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC27.32■■□□□ 1.96
SMC4Q9NTJ3 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SMC4Q9NTJ3 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
SMC4Q9NTJ3 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC27.31■■□□□ 1.96
SMC4Q9NTJ3 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SMC4Q9NTJ3 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC27.31■■□□□ 1.96
SMC4Q9NTJ3 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
SMC4Q9NTJ3 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SMC4Q9NTJ3 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SMC4Q9NTJ3 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC27.31■■□□□ 1.96
SMC4Q9NTJ3 AC104564.3-201ENST00000582367 638 ntBASIC27.31■■□□□ 1.96
SMC4Q9NTJ3 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC27.31■■□□□ 1.96
SMC4Q9NTJ3 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC27.31■■□□□ 1.96
SMC4Q9NTJ3 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC27.3■■□□□ 1.96
SMC4Q9NTJ3 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SMC4Q9NTJ3 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC27.3■■□□□ 1.96
SMC4Q9NTJ3 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SMC4Q9NTJ3 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SMC4Q9NTJ3 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SMC4Q9NTJ3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
SMC4Q9NTJ3 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
SMC4Q9NTJ3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SMC4Q9NTJ3 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
SMC4Q9NTJ3 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC27.29■■□□□ 1.96
SMC4Q9NTJ3 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC27.29■■□□□ 1.96
SMC4Q9NTJ3 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SMC4Q9NTJ3 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
SMC4Q9NTJ3 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC27.29■■□□□ 1.96
SMC4Q9NTJ3 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC27.29■■□□□ 1.96
SMC4Q9NTJ3 AC019069.1-201ENST00000610008 1333 ntBASIC27.29■■□□□ 1.96
SMC4Q9NTJ3 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
SMC4Q9NTJ3 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC27.29■■□□□ 1.96
SMC4Q9NTJ3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
SMC4Q9NTJ3 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SMC4Q9NTJ3 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SMC4Q9NTJ3 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
SMC4Q9NTJ3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SMC4Q9NTJ3 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC27.28■■□□□ 1.96
SMC4Q9NTJ3 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC27.28■■□□□ 1.96
SMC4Q9NTJ3 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC27.28■■□□□ 1.96
SMC4Q9NTJ3 YBX1P1-201ENST00000445822 960 ntBASIC27.28■■□□□ 1.96
SMC4Q9NTJ3 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
SMC4Q9NTJ3 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 TUB-203ENST00000534099 1759 ntTSL 2 BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SMC4Q9NTJ3 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC27.26■■□□□ 1.96
SMC4Q9NTJ3 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC27.26■■□□□ 1.96
SMC4Q9NTJ3 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.96
SMC4Q9NTJ3 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SMC4Q9NTJ3 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
SMC4Q9NTJ3 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC27.26■■□□□ 1.95
SMC4Q9NTJ3 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SMC4Q9NTJ3 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
SMC4Q9NTJ3 LINC02228-203ENST00000641970 1355 ntBASIC27.26■■□□□ 1.95
SMC4Q9NTJ3 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SMC4Q9NTJ3 AC007375.3-201ENST00000600936 2314 ntBASIC27.26■■□□□ 1.95
SMC4Q9NTJ3 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC27.26■■□□□ 1.95
SMC4Q9NTJ3 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SMC4Q9NTJ3 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC27.26■■□□□ 1.95
SMC4Q9NTJ3 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
SMC4Q9NTJ3 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 MFF-203ENST00000349901 1716 ntTSL 2 BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMC4Q9NTJ3 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC27.25■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms