Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIME1Q9H400 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.69■□□□□ 0.58
LIME1Q9H400 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
LIME1Q9H400 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
LIME1Q9H400 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
LIME1Q9H400 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.69■□□□□ 0.58
LIME1Q9H400 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIME1Q9H400 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIME1Q9H400 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.69■□□□□ 0.58
LIME1Q9H400 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.69■□□□□ 0.58
LIME1Q9H400 GUSBP6-202ENST00000438529 1198 ntBASIC18.69■□□□□ 0.58
LIME1Q9H400 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.69■□□□□ 0.58
LIME1Q9H400 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.69■□□□□ 0.58
LIME1Q9H400 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.69■□□□□ 0.58
LIME1Q9H400 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.69■□□□□ 0.58
LIME1Q9H400 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.69■□□□□ 0.58
LIME1Q9H400 AC242852.2-201ENST00000615738 1807 ntBASIC18.69■□□□□ 0.58
LIME1Q9H400 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
LIME1Q9H400 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.69■□□□□ 0.58
LIME1Q9H400 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIME1Q9H400 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIME1Q9H400 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.68■□□□□ 0.58
LIME1Q9H400 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC18.68■□□□□ 0.58
LIME1Q9H400 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIME1Q9H400 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIME1Q9H400 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIME1Q9H400 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIME1Q9H400 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIME1Q9H400 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.68■□□□□ 0.58
LIME1Q9H400 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.68■□□□□ 0.58
LIME1Q9H400 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LIME1Q9H400 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.68■□□□□ 0.58
LIME1Q9H400 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.68■□□□□ 0.58
LIME1Q9H400 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIME1Q9H400 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC18.68■□□□□ 0.58
LIME1Q9H400 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LIME1Q9H400 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIME1Q9H400 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIME1Q9H400 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.68■□□□□ 0.58
LIME1Q9H400 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LIME1Q9H400 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIME1Q9H400 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIME1Q9H400 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIME1Q9H400 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIME1Q9H400 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.67■□□□□ 0.58
LIME1Q9H400 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIME1Q9H400 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIME1Q9H400 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.67■□□□□ 0.58
LIME1Q9H400 SLC7A5P2-201ENST00000553010 536 ntBASIC18.67■□□□□ 0.58
LIME1Q9H400 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.67■□□□□ 0.58
LIME1Q9H400 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.67■□□□□ 0.58
LIME1Q9H400 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIME1Q9H400 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIME1Q9H400 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.67■□□□□ 0.58
LIME1Q9H400 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIME1Q9H400 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIME1Q9H400 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIME1Q9H400 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.66■□□□□ 0.58
LIME1Q9H400 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIME1Q9H400 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIME1Q9H400 DUX4L16-201ENST00000555130 1264 ntBASIC18.66■□□□□ 0.58
LIME1Q9H400 AC104187.1-201ENST00000607510 612 ntBASIC18.66■□□□□ 0.58
LIME1Q9H400 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.66■□□□□ 0.58
LIME1Q9H400 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.66■□□□□ 0.58
LIME1Q9H400 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIME1Q9H400 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIME1Q9H400 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIME1Q9H400 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIME1Q9H400 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.65■□□□□ 0.58
LIME1Q9H400 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.65■□□□□ 0.58
LIME1Q9H400 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIME1Q9H400 AC010141.3-201ENST00000456659 717 ntBASIC18.65■□□□□ 0.58
LIME1Q9H400 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.65■□□□□ 0.58
LIME1Q9H400 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
LIME1Q9H400 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.65■□□□□ 0.58
LIME1Q9H400 AC005181.1-201ENST00000604782 1256 ntBASIC18.65■□□□□ 0.58
LIME1Q9H400 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIME1Q9H400 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.65■□□□□ 0.58
LIME1Q9H400 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIME1Q9H400 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIME1Q9H400 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIME1Q9H400 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
LIME1Q9H400 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
LIME1Q9H400 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.64■□□□□ 0.57
LIME1Q9H400 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC18.64■□□□□ 0.57
LIME1Q9H400 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIME1Q9H400 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIME1Q9H400 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIME1Q9H400 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
LIME1Q9H400 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.64■□□□□ 0.57
LIME1Q9H400 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.64■□□□□ 0.57
LIME1Q9H400 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.64■□□□□ 0.57
LIME1Q9H400 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIME1Q9H400 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIME1Q9H400 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIME1Q9H400 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LIME1Q9H400 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIME1Q9H400 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIME1Q9H400 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIME1Q9H400 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms