Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
LMX1AQ8TE12 AL138781.1-201ENST00000566567 1274 ntBASIC20.78■□□□□ 0.92
LMX1AQ8TE12 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
LMX1AQ8TE12 AC120498.10-201ENST00000621827 505 ntBASIC20.78■□□□□ 0.92
LMX1AQ8TE12 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
LMX1AQ8TE12 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LMX1AQ8TE12 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LMX1AQ8TE12 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LMX1AQ8TE12 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LMX1AQ8TE12 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
LMX1AQ8TE12 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
LMX1AQ8TE12 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.77■□□□□ 0.92
LMX1AQ8TE12 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.77■□□□□ 0.92
LMX1AQ8TE12 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.77■□□□□ 0.92
LMX1AQ8TE12 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
LMX1AQ8TE12 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LMX1AQ8TE12 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LMX1AQ8TE12 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1AQ8TE12 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1AQ8TE12 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1AQ8TE12 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
LMX1AQ8TE12 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1AQ8TE12 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1AQ8TE12 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.76■□□□□ 0.91
LMX1AQ8TE12 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.76■□□□□ 0.91
LMX1AQ8TE12 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1AQ8TE12 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1AQ8TE12 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1AQ8TE12 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1AQ8TE12 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
LMX1AQ8TE12 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.75■□□□□ 0.91
LMX1AQ8TE12 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1AQ8TE12 CD99P1-205ENST00000527459 561 ntBASIC20.75■□□□□ 0.91
LMX1AQ8TE12 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.75■□□□□ 0.91
LMX1AQ8TE12 AC133552.2-202ENST00000575694 574 ntBASIC20.75■□□□□ 0.91
LMX1AQ8TE12 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LMX1AQ8TE12 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1AQ8TE12 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1AQ8TE12 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1AQ8TE12 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1AQ8TE12 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1AQ8TE12 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LMX1AQ8TE12 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 AC068338.2-201ENST00000563278 1430 ntBASIC20.73■□□□□ 0.91
LMX1AQ8TE12 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 ABHD17AP1-201ENST00000358206 933 ntBASIC20.73■□□□□ 0.91
LMX1AQ8TE12 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LMX1AQ8TE12 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 POU5F1P4-201ENST00000413175 1085 ntBASIC20.72■□□□□ 0.91
LMX1AQ8TE12 CYP2T1P-201ENST00000432607 1285 ntBASIC20.72■□□□□ 0.91
LMX1AQ8TE12 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
LMX1AQ8TE12 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LMX1AQ8TE12 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.71■□□□□ 0.91
LMX1AQ8TE12 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
LMX1AQ8TE12 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LMX1AQ8TE12 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
LMX1AQ8TE12 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LMX1AQ8TE12 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms