Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHFQ7M4L6 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.16■□□□□ 0.66
SHFQ7M4L6 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHFQ7M4L6 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.16■□□□□ 0.66
SHFQ7M4L6 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.16■□□□□ 0.66
SHFQ7M4L6 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.16■□□□□ 0.66
SHFQ7M4L6 AL035685.1-201ENST00000636663 812 ntBASIC19.16■□□□□ 0.66
SHFQ7M4L6 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.16■□□□□ 0.66
SHFQ7M4L6 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHFQ7M4L6 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.16■□□□□ 0.66
SHFQ7M4L6 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHFQ7M4L6 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHFQ7M4L6 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SHFQ7M4L6 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHFQ7M4L6 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHFQ7M4L6 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHFQ7M4L6 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHFQ7M4L6 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHFQ7M4L6 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 AC068587.7-201ENST00000641602 218 ntBASIC19.15■□□□□ 0.66
SHFQ7M4L6 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHFQ7M4L6 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHFQ7M4L6 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.15■□□□□ 0.66
SHFQ7M4L6 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SHFQ7M4L6 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
SHFQ7M4L6 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.14■□□□□ 0.66
SHFQ7M4L6 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SHFQ7M4L6 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SHFQ7M4L6 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SHFQ7M4L6 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHFQ7M4L6 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHFQ7M4L6 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHFQ7M4L6 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.14■□□□□ 0.65
SHFQ7M4L6 AC092171.4-201ENST00000609130 632 ntBASIC19.14■□□□□ 0.65
SHFQ7M4L6 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.14■□□□□ 0.65
SHFQ7M4L6 OR7E47P-201ENST00000546390 1422 ntBASIC19.14■□□□□ 0.65
SHFQ7M4L6 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.14■□□□□ 0.65
SHFQ7M4L6 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.14■□□□□ 0.65
SHFQ7M4L6 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.14■□□□□ 0.65
SHFQ7M4L6 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHFQ7M4L6 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.14■□□□□ 0.65
SHFQ7M4L6 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHFQ7M4L6 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHFQ7M4L6 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.13■□□□□ 0.65
SHFQ7M4L6 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHFQ7M4L6 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
SHFQ7M4L6 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHFQ7M4L6 AC006455.2-201ENST00000429931 906 ntBASIC19.13■□□□□ 0.65
SHFQ7M4L6 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.13■□□□□ 0.65
SHFQ7M4L6 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHFQ7M4L6 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHFQ7M4L6 MIR3621-201ENST00000580529 85 ntBASIC19.13■□□□□ 0.65
SHFQ7M4L6 AC104564.3-201ENST00000582367 638 ntBASIC19.13■□□□□ 0.65
SHFQ7M4L6 AC099791.2-201ENST00000605725 427 ntBASIC19.13■□□□□ 0.65
SHFQ7M4L6 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHFQ7M4L6 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.13■□□□□ 0.65
SHFQ7M4L6 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHFQ7M4L6 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHFQ7M4L6 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHFQ7M4L6 LINC01006-201ENST00000333319 2292 ntBASIC19.13■□□□□ 0.65
SHFQ7M4L6 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHFQ7M4L6 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHFQ7M4L6 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHFQ7M4L6 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHFQ7M4L6 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHFQ7M4L6 LINC01521-201ENST00000504184 1943 ntBASIC19.12■□□□□ 0.65
SHFQ7M4L6 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHFQ7M4L6 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.12■□□□□ 0.65
SHFQ7M4L6 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHFQ7M4L6 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHFQ7M4L6 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHFQ7M4L6 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHFQ7M4L6 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHFQ7M4L6 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHFQ7M4L6 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.12■□□□□ 0.65
SHFQ7M4L6 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHFQ7M4L6 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.12■□□□□ 0.65
SHFQ7M4L6 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
SHFQ7M4L6 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SHFQ7M4L6 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.11■□□□□ 0.65
SHFQ7M4L6 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.11■□□□□ 0.65
SHFQ7M4L6 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHFQ7M4L6 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHFQ7M4L6 GUSBP5-201ENST00000418136 578 ntBASIC19.11■□□□□ 0.65
SHFQ7M4L6 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHFQ7M4L6 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHFQ7M4L6 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHFQ7M4L6 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms