Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 SMUG1P1-201ENST00000590640 811 ntBASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 GRAMD4P2-201ENST00000423297 1097 ntBASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 AC027682.1-201ENST00000562846 899 ntBASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 AC110285.6-201ENST00000617652 491 ntBASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC40Q4G0X9 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 AICDA-202ENST00000537228 667 ntTSL 5 BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
CCDC40Q4G0X9 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC40Q4G0X9 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC40Q4G0X9 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC40Q4G0X9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
CCDC40Q4G0X9 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC23.34■■□□□ 1.33
CCDC40Q4G0X9 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC40Q4G0X9 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
CCDC40Q4G0X9 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.34■■□□□ 1.33
CCDC40Q4G0X9 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC40Q4G0X9 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC40Q4G0X9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC40Q4G0X9 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC23.33■■□□□ 1.33
CCDC40Q4G0X9 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC40Q4G0X9 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC40Q4G0X9 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC40Q4G0X9 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC40Q4G0X9 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23.33■■□□□ 1.33
CCDC40Q4G0X9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23.33■■□□□ 1.33
CCDC40Q4G0X9 MPST-208ENST00000628507 698 ntTSL 5 BASIC23.33■■□□□ 1.33
CCDC40Q4G0X9 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC40Q4G0X9 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC40Q4G0X9 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC23.33■■□□□ 1.32
CCDC40Q4G0X9 TSPY26P-201ENST00000476365 1326 ntBASIC23.33■■□□□ 1.32
CCDC40Q4G0X9 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 EDA-201ENST00000338901 1233 ntBASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 AP001330.3-201ENST00000520123 633 ntBASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 AC003102.1-202ENST00000563394 1796 ntBASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC23.32■■□□□ 1.32
CCDC40Q4G0X9 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC40Q4G0X9 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC23.31■■□□□ 1.32
CCDC40Q4G0X9 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.31■■□□□ 1.32
CCDC40Q4G0X9 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC23.31■■□□□ 1.32
CCDC40Q4G0X9 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC40Q4G0X9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC40Q4G0X9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC40Q4G0X9 AP006587.3-201ENST00000525742 1516 ntBASIC23.31■■□□□ 1.32
CCDC40Q4G0X9 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
CCDC40Q4G0X9 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC40Q4G0X9 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC40Q4G0X9 ASL-203ENST00000380839 1765 ntTSL 5 BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 AC005229.4-201ENST00000610085 2198 ntBASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms