Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RFX3P48380 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.92■□□□□ 0.78
RFX3P48380 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.92■□□□□ 0.78
RFX3P48380 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.92■□□□□ 0.78
RFX3P48380 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.92■□□□□ 0.78
RFX3P48380 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RFX3P48380 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RFX3P48380 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RFX3P48380 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RFX3P48380 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RFX3P48380 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.91■□□□□ 0.78
RFX3P48380 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.91■□□□□ 0.78
RFX3P48380 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RFX3P48380 AC105233.4-201ENST00000642045 216 ntBASIC19.91■□□□□ 0.78
RFX3P48380 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.91■□□□□ 0.78
RFX3P48380 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.91■□□□□ 0.78
RFX3P48380 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RFX3P48380 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.91■□□□□ 0.78
RFX3P48380 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.91■□□□□ 0.78
RFX3P48380 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.91■□□□□ 0.78
RFX3P48380 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RFX3P48380 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
RFX3P48380 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RFX3P48380 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFX3P48380 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFX3P48380 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFX3P48380 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
RFX3P48380 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFX3P48380 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
RFX3P48380 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFX3P48380 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFX3P48380 AC105265.2-201ENST00000467189 838 ntBASIC19.9■□□□□ 0.78
RFX3P48380 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.9■□□□□ 0.78
RFX3P48380 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.9■□□□□ 0.78
RFX3P48380 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.9■□□□□ 0.78
RFX3P48380 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFX3P48380 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.9■□□□□ 0.78
RFX3P48380 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.9■□□□□ 0.78
RFX3P48380 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFX3P48380 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.9■□□□□ 0.78
RFX3P48380 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
RFX3P48380 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFX3P48380 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
RFX3P48380 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
RFX3P48380 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RFX3P48380 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.89■□□□□ 0.77
RFX3P48380 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
RFX3P48380 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
RFX3P48380 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
RFX3P48380 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.89■□□□□ 0.77
RFX3P48380 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.89■□□□□ 0.77
RFX3P48380 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
RFX3P48380 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.89■□□□□ 0.77
RFX3P48380 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.89■□□□□ 0.77
RFX3P48380 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.89■□□□□ 0.77
RFX3P48380 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.89■□□□□ 0.77
RFX3P48380 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.89■□□□□ 0.77
RFX3P48380 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
RFX3P48380 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.88■□□□□ 0.77
RFX3P48380 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.88■□□□□ 0.77
RFX3P48380 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.88■□□□□ 0.77
RFX3P48380 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 SMUG1P1-201ENST00000590640 811 ntBASIC19.88■□□□□ 0.77
RFX3P48380 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.88■□□□□ 0.77
RFX3P48380 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFX3P48380 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.87■□□□□ 0.77
RFX3P48380 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
RFX3P48380 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.87■□□□□ 0.77
RFX3P48380 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
RFX3P48380 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
RFX3P48380 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RFX3P48380 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.87■□□□□ 0.77
RFX3P48380 AC026471.6-201ENST00000622954 1905 ntBASIC19.87■□□□□ 0.77
RFX3P48380 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
RFX3P48380 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RFX3P48380 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.87■□□□□ 0.77
RFX3P48380 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.87■□□□□ 0.77
RFX3P48380 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RFX3P48380 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RFX3P48380 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.87■□□□□ 0.77
RFX3P48380 AC007375.3-201ENST00000600936 2314 ntBASIC19.87■□□□□ 0.77
RFX3P48380 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
RFX3P48380 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RFX3P48380 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RFX3P48380 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.86■□□□□ 0.77
RFX3P48380 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RFX3P48380 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
RFX3P48380 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms