Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC026366.1-201ENST00000488803 879 ntBASIC21.39■■□□□ 1.01
CXCL12P48061 UNC93B4-201ENST00000505679 747 ntBASIC21.39■■□□□ 1.01
CXCL12P48061 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.39■■□□□ 1.01
CXCL12P48061 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.39■■□□□ 1.01
CXCL12P48061 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.39■■□□□ 1.01
CXCL12P48061 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CXCL12P48061 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CXCL12P48061 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CXCL12P48061 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CXCL12P48061 LINC00526-201ENST00000581067 1875 ntBASIC21.39■■□□□ 1.01
CXCL12P48061 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CXCL12P48061 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CXCL12P48061 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CXCL12P48061 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.38■■□□□ 1.01
CXCL12P48061 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.38■■□□□ 1.01
CXCL12P48061 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.38■■□□□ 1.01
CXCL12P48061 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.38■■□□□ 1.01
CXCL12P48061 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CXCL12P48061 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CXCL12P48061 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CXCL12P48061 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CXCL12P48061 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.37■■□□□ 1.01
CXCL12P48061 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CXCL12P48061 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CXCL12P48061 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.37■■□□□ 1.01
CXCL12P48061 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.37■■□□□ 1.01
CXCL12P48061 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.37■■□□□ 1.01
CXCL12P48061 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
CXCL12P48061 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.37■■□□□ 1.01
CXCL12P48061 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CXCL12P48061 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.37■■□□□ 1.01
CXCL12P48061 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
CXCL12P48061 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
CXCL12P48061 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.37■■□□□ 1.01
CXCL12P48061 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CXCL12P48061 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CXCL12P48061 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CXCL12P48061 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CXCL12P48061 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.36■■□□□ 1.01
CXCL12P48061 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.36■■□□□ 1.01
CXCL12P48061 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CXCL12P48061 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.36■■□□□ 1.01
CXCL12P48061 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CXCL12P48061 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CXCL12P48061 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CXCL12P48061 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.36■■□□□ 1.01
CXCL12P48061 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.36■■□□□ 1.01
CXCL12P48061 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.36■■□□□ 1.01
CXCL12P48061 UNC93B5-201ENST00000530315 699 ntBASIC21.36■■□□□ 1.01
CXCL12P48061 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CXCL12P48061 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.36■■□□□ 1.01
CXCL12P48061 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CXCL12P48061 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CXCL12P48061 ANOS2P-203ENST00000472227 1816 ntBASIC21.35■■□□□ 1.01
CXCL12P48061 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.35■■□□□ 1.01
CXCL12P48061 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.35■■□□□ 1.01
CXCL12P48061 AC073648.6-201ENST00000641589 218 ntBASIC21.35■■□□□ 1.01
CXCL12P48061 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CXCL12P48061 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CXCL12P48061 RBM17P2-201ENST00000616397 1405 ntBASIC21.35■■□□□ 1.01
CXCL12P48061 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CXCL12P48061 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.35■■□□□ 1.01
CXCL12P48061 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CXCL12P48061 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CXCL12P48061 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CXCL12P48061 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CXCL12P48061 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CXCL12P48061 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CXCL12P48061 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CXCL12P48061 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
CXCL12P48061 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CXCL12P48061 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CXCL12P48061 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.34■■□□□ 1.01
CXCL12P48061 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.34■■□□□ 1.01
CXCL12P48061 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CXCL12P48061 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.34■■□□□ 1.01
CXCL12P48061 AP003097.1-201ENST00000530657 1135 ntBASIC21.34■■□□□ 1.01
CXCL12P48061 KRT16P2-201ENST00000414673 1423 ntBASIC21.34■■□□□ 1.01
CXCL12P48061 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CXCL12P48061 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CXCL12P48061 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CXCL12P48061 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
CXCL12P48061 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CXCL12P48061 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CXCL12P48061 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CXCL12P48061 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CXCL12P48061 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CXCL12P48061 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CXCL12P48061 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CXCL12P48061 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CXCL12P48061 LSM12P1-201ENST00000411836 588 ntBASIC21.33■■□□□ 1.01
CXCL12P48061 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.33■■□□□ 1.01
CXCL12P48061 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.33■■□□□ 1.01
CXCL12P48061 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.33■■□□□ 1.01
CXCL12P48061 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CXCL12P48061 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CXCL12P48061 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
CXCL12P48061 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
CXCL12P48061 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CXCL12P48061 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms