Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC30.45■■■□□ 2.46
NPHP4O75161 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
NPHP4O75161 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
NPHP4O75161 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC30.44■■■□□ 2.46
NPHP4O75161 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC30.44■■■□□ 2.46
NPHP4O75161 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP4O75161 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC30.44■■■□□ 2.46
NPHP4O75161 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP4O75161 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC30.44■■■□□ 2.46
NPHP4O75161 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
NPHP4O75161 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP4O75161 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC30.44■■■□□ 2.46
NPHP4O75161 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP4O75161 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP4O75161 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
NPHP4O75161 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC30.43■■■□□ 2.46
NPHP4O75161 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC30.43■■■□□ 2.46
NPHP4O75161 MDFI-202ENST00000373050 809 ntTSL 2 BASIC30.43■■■□□ 2.46
NPHP4O75161 LSM12P1-201ENST00000411836 588 ntBASIC30.43■■■□□ 2.46
NPHP4O75161 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC30.43■■■□□ 2.46
NPHP4O75161 BX088651.1-201ENST00000540551 451 ntBASIC30.43■■■□□ 2.46
NPHP4O75161 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC30.43■■■□□ 2.46
NPHP4O75161 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
NPHP4O75161 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
NPHP4O75161 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
NPHP4O75161 AP006587.3-201ENST00000525742 1516 ntBASIC30.42■■■□□ 2.46
NPHP4O75161 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
NPHP4O75161 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
NPHP4O75161 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
NPHP4O75161 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
NPHP4O75161 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC30.42■■■□□ 2.46
NPHP4O75161 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC30.42■■■□□ 2.46
NPHP4O75161 AC120498.10-201ENST00000621827 505 ntBASIC30.42■■■□□ 2.46
NPHP4O75161 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC30.42■■■□□ 2.46
NPHP4O75161 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC30.42■■■□□ 2.46
NPHP4O75161 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
NPHP4O75161 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC30.41■■■□□ 2.46
NPHP4O75161 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC30.41■■■□□ 2.46
NPHP4O75161 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC30.41■■■□□ 2.46
NPHP4O75161 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC30.41■■■□□ 2.46
NPHP4O75161 HLA-B-256ENST00000639848 1089 ntBASIC30.41■■■□□ 2.46
NPHP4O75161 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC30.41■■■□□ 2.46
NPHP4O75161 KRT17P1-201ENST00000399211 1546 ntBASIC30.41■■■□□ 2.46
NPHP4O75161 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
NPHP4O75161 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
NPHP4O75161 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC30.4■■■□□ 2.46
NPHP4O75161 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC30.4■■■□□ 2.46
NPHP4O75161 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC30.4■■■□□ 2.46
NPHP4O75161 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
NPHP4O75161 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
NPHP4O75161 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
NPHP4O75161 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC30.4■■■□□ 2.46
NPHP4O75161 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
NPHP4O75161 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC30.39■■■□□ 2.46
NPHP4O75161 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP4O75161 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP4O75161 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP4O75161 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC30.39■■■□□ 2.46
NPHP4O75161 NME6-213ENST00000451657 871 ntTSL 2 BASIC30.39■■■□□ 2.46
NPHP4O75161 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP4O75161 PBX1-209ENST00000485769 834 ntTSL 2 BASIC30.39■■■□□ 2.46
NPHP4O75161 AC233263.1-201ENST00000578059 224 ntBASIC30.39■■■□□ 2.46
NPHP4O75161 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC30.39■■■□□ 2.46
NPHP4O75161 SPIB-206ENST00000596074 847 ntTSL 2 BASIC30.39■■■□□ 2.46
NPHP4O75161 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP4O75161 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP4O75161 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP4O75161 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
NPHP4O75161 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP4O75161 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC30.39■■■□□ 2.45
NPHP4O75161 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
NPHP4O75161 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
NPHP4O75161 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC30.39■■■□□ 2.45
NPHP4O75161 AC243732.1-201ENST00000612648 864 ntBASIC30.39■■■□□ 2.45
NPHP4O75161 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
NPHP4O75161 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
NPHP4O75161 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
NPHP4O75161 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
NPHP4O75161 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC30.38■■■□□ 2.45
NPHP4O75161 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
NPHP4O75161 AL034346.1-201ENST00000568244 1277 ntBASIC30.38■■■□□ 2.45
NPHP4O75161 RN7SL471P-201ENST00000580476 299 ntBASIC30.38■■■□□ 2.45
NPHP4O75161 AC008175.2-201ENST00000612840 297 ntBASIC30.38■■■□□ 2.45
NPHP4O75161 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
NPHP4O75161 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC30.37■■■□□ 2.45
NPHP4O75161 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP4O75161 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP4O75161 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC30.37■■■□□ 2.45
NPHP4O75161 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP4O75161 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC30.37■■■□□ 2.45
NPHP4O75161 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC30.37■■■□□ 2.45
NPHP4O75161 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP4O75161 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC30.37■■■□□ 2.45
NPHP4O75161 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP4O75161 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC30.37■■■□□ 2.45
NPHP4O75161 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC30.36■■■□□ 2.45
NPHP4O75161 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC30.36■■■□□ 2.45
NPHP4O75161 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP4O75161 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP4O75161 EED-207ENST00000528180 1745 ntTSL 5 BASIC30.36■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms