Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 USP7-215ENST00000566273 577 ntTSL 410.82□□□□□ -0.684e-6■□□□□ 9.9
CDC40O60508 RPS21-204ENST00000450116 418 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.734e-6■□□□□ 9.9
CDC40O60508 USP7-214ENST00000566224 503 ntTSL 310.18□□□□□ -0.784e-6■□□□□ 9.9
CDC40O60508 EIF4A2-227ENST00000498746 579 ntTSL 210.1□□□□□ -0.794e-6■□□□□ 9.9
CDC40O60508 ARF1-201ENST00000272102 1888 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.844e-6■□□□□ 9.9
CDC40O60508 RPS21-201ENST00000343986 344 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.994e-6■□□□□ 9.9
CDC40O60508 USP7-203ENST00000542333 1966 ntTSL 28.33□□□□□ -1.084e-6■□□□□ 9.9
CDC40O60508 USP7-212ENST00000566004 559 ntTSL 46.43□□□□□ -1.384e-6■□□□□ 9.9
CDC40O60508 EIF4A2-211ENST00000465222 676 ntTSL 25.91□□□□□ -1.464e-6■□□□□ 9.9
CDC40O60508 EIF4A2-218ENST00000475653 909 ntTSL 25.91□□□□□ -1.464e-6■□□□□ 9.9
CDC40O60508 EIF4A2-210ENST00000465032 578 ntTSL 25.82□□□□□ -1.484e-6■□□□□ 9.9
CDC40O60508 EIF4A2-212ENST00000465267 1054 ntTSL 25.82□□□□□ -1.484e-6■□□□□ 9.9
CDC40O60508 EIF4A2-224ENST00000495049 576 ntTSL 25.82□□□□□ -1.484e-6■□□□□ 9.9
CDC40O60508 USP7-207ENST00000563085 3194 ntTSL 25.65□□□□□ -1.54e-6■□□□□ 9.9
CDC40O60508 USP7-209ENST00000564117 479 ntTSL 45.42□□□□□ -1.544e-6■□□□□ 9.9
CDC40O60508 EIF4A2-221ENST00000491473 579 ntTSL 25.37□□□□□ -1.554e-6■□□□□ 9.9
CDC40O60508 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.09□□□□□ -1.594e-6■□□□□ 9.9
CDC40O60508 USP7-210ENST00000565455 3554 ntTSL 24.95□□□□□ -1.624e-6■□□□□ 9.9
CDC40O60508 USP7-219ENST00000569230 569 ntTSL 54.69□□□□□ -1.664e-6■□□□□ 9.9
CDC40O60508 EIF4A2-220ENST00000486805 590 ntTSL 22.94□□□□□ -1.944e-6■□□□□ 9.9
CDC40O60508 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.211e-323■□□□□ 9.9
CDC40O60508 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.191e-323■□□□□ 9.9
CDC40O60508 HSP90AB1-202ENST00000371554 2674 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.932e-6■□□□□ 9.9
CDC40O60508 HSP90AB1-203ENST00000371646 2572 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.972e-6■□□□□ 9.9
CDC40O60508 HSP90AB1-201ENST00000353801 2582 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.082e-6■□□□□ 9.9
CDC40O60508 HSP90AB1-204ENST00000620073 2644 ntAPPRIS P1 TSL 5 BASIC7.99□□□□□ -1.132e-6■□□□□ 9.9
CDC40O60508 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.12■■□□□ 1.131e-6■□□□□ 9.9
CDC40O60508 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.031e-6■□□□□ 9.9
CDC40O60508 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.4■■□□□ 1.021e-6■□□□□ 9.9
CDC40O60508 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.3■■□□□ 11e-6■□□□□ 9.9
CDC40O60508 PTOV1-205ENST00000595934 1880 nt21.27■■□□□ 11e-6■□□□□ 9.9
CDC40O60508 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.951e-6■□□□□ 9.9
CDC40O60508 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.951e-6■□□□□ 9.9
CDC40O60508 SLC4A7-204ENST00000428005 1572 ntTSL 1 (best)20.73■□□□□ 0.911e-6■□□□□ 9.9
CDC40O60508 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.53■□□□□ 0.881e-6■□□□□ 9.9
CDC40O60508 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.742e-8■□□□□ 9.9
CDC40O60508 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.731e-6■□□□□ 9.9
CDC40O60508 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.662e-8■□□□□ 9.9
CDC40O60508 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.631e-6■□□□□ 9.9
CDC40O60508 PHPT1-205ENST00000492540 1316 ntTSL 1 (best)17.94■□□□□ 0.462e-8■□□□□ 9.9
CDC40O60508 TCEA1-210ENST00000522397 852 ntTSL 317.88■□□□□ 0.451e-6■□□□□ 9.9
CDC40O60508 PTOV1-213ENST00000600105 635 ntTSL 317.57■□□□□ 0.41e-6■□□□□ 9.9
CDC40O60508 PTOV1-203ENST00000594165 986 ntTSL 317.48■□□□□ 0.391e-6■□□□□ 9.9
CDC40O60508 PTOV1-209ENST00000597793 1716 ntTSL 1 (best)17.47■□□□□ 0.391e-6■□□□□ 9.9
CDC40O60508 NISCH-209ENST00000485765 563 ntTSL 417.45■□□□□ 0.381e-6■□□□□ 9.9
CDC40O60508 IL32-224ENST00000534748 580 ntTSL 317.45■□□□□ 0.381e-6■□□□□ 9.9
CDC40O60508 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.31e-6■□□□□ 9.9
CDC40O60508 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.37■□□□□ 0.212e-8■□□□□ 9.9
CDC40O60508 RPL10A-204ENST00000478340 962 ntTSL 216.21■□□□□ 0.191e-6■□□□□ 9.9
CDC40O60508 ECHDC1-216ENST00000479525 1368 ntTSL 516.2■□□□□ 0.181e-6■□□□□ 9.9
CDC40O60508 IL32-221ENST00000532247 1381 ntTSL 1 (best)16.2■□□□□ 0.181e-6■□□□□ 9.9
CDC40O60508 NISCH-213ENST00000489895 5350 ntTSL 216.17■□□□□ 0.181e-6■□□□□ 9.9
CDC40O60508 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.161e-6■□□□□ 9.9
CDC40O60508 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.97■□□□□ 0.151e-6■□□□□ 9.9
CDC40O60508 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.35■□□□□ 0.051e-6■□□□□ 9.9
CDC40O60508 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.35■□□□□ 0.051e-6■□□□□ 9.9
CDC40O60508 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.021e-6■□□□□ 9.9
CDC40O60508 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.021e-6■□□□□ 9.9
CDC40O60508 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.021e-6■□□□□ 9.9
CDC40O60508 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.2■□□□□ 0.021e-6■□□□□ 9.9
CDC40O60508 IL32-209ENST00000525228 566 ntAPPRIS ALT2 TSL 415.07■□□□□ 01e-6■□□□□ 9.9
CDC40O60508 IL32-220ENST00000532086 930 ntTSL 1 (best)15.07■□□□□ 01e-6■□□□□ 9.9
CDC40O60508 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.04■□□□□ -01e-6■□□□□ 9.9
CDC40O60508 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.04■□□□□ -01e-6■□□□□ 9.9
CDC40O60508 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -01e-6■□□□□ 9.9
CDC40O60508 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -01e-6■□□□□ 9.9
CDC40O60508 IL32-228ENST00000548807 810 ntAPPRIS ALT2 TSL 315.04■□□□□ -01e-6■□□□□ 9.9
CDC40O60508 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.061e-6■□□□□ 9.9
CDC40O60508 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.61□□□□□ -0.071e-6■□□□□ 9.9
CDC40O60508 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.54□□□□□ -0.081e-6■□□□□ 9.9
CDC40O60508 IL32-210ENST00000525377 997 ntAPPRIS ALT2 TSL 514.52□□□□□ -0.091e-6■□□□□ 9.9
CDC40O60508 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.091e-6■□□□□ 9.9
CDC40O60508 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.52□□□□□ -0.091e-6■□□□□ 9.9
CDC40O60508 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.52□□□□□ -0.091e-6■□□□□ 9.9
CDC40O60508 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.12e-8■□□□□ 9.9
CDC40O60508 RPL10A-205ENST00000490335 632 ntTSL 214.4□□□□□ -0.11e-6■□□□□ 9.9
CDC40O60508 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.38□□□□□ -0.111e-6■□□□□ 9.9
CDC40O60508 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.121e-6■□□□□ 9.9
CDC40O60508 CRLF1-202ENST00000593286 514 ntTSL 414.25□□□□□ -0.131e-6■□□□□ 9.9
CDC40O60508 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.131e-6■□□□□ 9.9
CDC40O60508 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.131e-6■□□□□ 9.9
CDC40O60508 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.141e-6■□□□□ 9.9
CDC40O60508 SLC4A7-208ENST00000437266 3407 ntTSL 1 (best)14.12□□□□□ -0.151e-6■□□□□ 9.9
CDC40O60508 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.161e-6■□□□□ 9.9
CDC40O60508 PTOV1-210ENST00000598325 1438 ntTSL 514.02□□□□□ -0.161e-6■□□□□ 9.9
CDC40O60508 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.99□□□□□ -0.171e-6■□□□□ 9.9
CDC40O60508 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.191e-6■□□□□ 9.9
CDC40O60508 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.89□□□□□ -0.191e-6■□□□□ 9.9
CDC40O60508 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.191e-6■□□□□ 9.9
CDC40O60508 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.21e-6■□□□□ 9.9
CDC40O60508 USP36-214ENST00000589225 5885 ntTSL 1 (best)13.78□□□□□ -0.22e-8■□□□□ 9.9
CDC40O60508 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.75□□□□□ -0.211e-6■□□□□ 9.9
CDC40O60508 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC13.72□□□□□ -0.211e-6■□□□□ 9.9
CDC40O60508 RPL10A-203ENST00000467020 1069 ntTSL 313.54□□□□□ -0.241e-6■□□□□ 9.9
CDC40O60508 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.52□□□□□ -0.251e-6■□□□□ 9.9
CDC40O60508 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.36□□□□□ -0.271e-6■□□□□ 9.9
CDC40O60508 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.281e-6■□□□□ 9.9
CDC40O60508 USP36-207ENST00000587010 607 ntTSL 313.23□□□□□ -0.292e-8■□□□□ 9.9
CDC40O60508 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.31e-6■□□□□ 9.9
CDC40O60508 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC13.06□□□□□ -0.321e-6■□□□□ 9.9
Retrieved 100 of 5,364 protein–RNA pairs in 27.1 ms