Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 AC142381.2-201ENST00000566120 298 ntBASIC18.75■□□□□ 0.59
SGCEO43556 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.75■□□□□ 0.59
SGCEO43556 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SGCEO43556 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.75■□□□□ 0.59
SGCEO43556 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SGCEO43556 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.74■□□□□ 0.59
SGCEO43556 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.74■□□□□ 0.59
SGCEO43556 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
SGCEO43556 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC18.74■□□□□ 0.59
SGCEO43556 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SGCEO43556 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SGCEO43556 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
SGCEO43556 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.73■□□□□ 0.59
SGCEO43556 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.73■□□□□ 0.59
SGCEO43556 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SGCEO43556 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SGCEO43556 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SGCEO43556 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.73■□□□□ 0.59
SGCEO43556 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SGCEO43556 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.73■□□□□ 0.59
SGCEO43556 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.73■□□□□ 0.59
SGCEO43556 AC105233.4-201ENST00000642045 216 ntBASIC18.73■□□□□ 0.59
SGCEO43556 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SGCEO43556 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SGCEO43556 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
SGCEO43556 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SGCEO43556 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SGCEO43556 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SGCEO43556 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SGCEO43556 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.72■□□□□ 0.59
SGCEO43556 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SGCEO43556 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SGCEO43556 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SGCEO43556 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SGCEO43556 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SGCEO43556 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SGCEO43556 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.72■□□□□ 0.59
SGCEO43556 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.72■□□□□ 0.59
SGCEO43556 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SGCEO43556 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.72■□□□□ 0.59
SGCEO43556 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.72■□□□□ 0.59
SGCEO43556 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SGCEO43556 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SGCEO43556 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.72■□□□□ 0.59
SGCEO43556 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
SGCEO43556 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.72■□□□□ 0.59
SGCEO43556 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SGCEO43556 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SGCEO43556 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SGCEO43556 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
SGCEO43556 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SGCEO43556 MIR572-201ENST00000384983 95 ntBASIC18.71■□□□□ 0.59
SGCEO43556 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SGCEO43556 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SGCEO43556 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.71■□□□□ 0.59
SGCEO43556 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.71■□□□□ 0.59
SGCEO43556 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
SGCEO43556 AC005837.3-201ENST00000612163 286 ntBASIC18.71■□□□□ 0.59
SGCEO43556 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SGCEO43556 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SGCEO43556 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.71■□□□□ 0.59
SGCEO43556 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SGCEO43556 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SGCEO43556 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SGCEO43556 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SGCEO43556 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SGCEO43556 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SGCEO43556 AC026471.6-201ENST00000622954 1905 ntBASIC18.7■□□□□ 0.58
SGCEO43556 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SGCEO43556 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
SGCEO43556 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SGCEO43556 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.7■□□□□ 0.58
SGCEO43556 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.7■□□□□ 0.58
SGCEO43556 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.7■□□□□ 0.58
SGCEO43556 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SGCEO43556 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.7■□□□□ 0.58
SGCEO43556 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SGCEO43556 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SGCEO43556 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.7■□□□□ 0.58
SGCEO43556 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.7■□□□□ 0.58
SGCEO43556 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.7■□□□□ 0.58
SGCEO43556 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SGCEO43556 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SGCEO43556 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SGCEO43556 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.7■□□□□ 0.58
SGCEO43556 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SGCEO43556 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SGCEO43556 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms