Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.38■■□□□ 1.01
TRIM38O00635 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.38■■□□□ 1.01
TRIM38O00635 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM38O00635 AC139530.1-201ENST00000575312 1977 ntBASIC21.37■■□□□ 1.01
TRIM38O00635 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM38O00635 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM38O00635 C11orf96-202ENST00000528572 1834 ntBASIC21.37■■□□□ 1.01
TRIM38O00635 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM38O00635 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
TRIM38O00635 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.37■■□□□ 1.01
TRIM38O00635 SMUG1P1-201ENST00000590640 811 ntBASIC21.37■■□□□ 1.01
TRIM38O00635 AC068587.7-201ENST00000641602 218 ntBASIC21.37■■□□□ 1.01
TRIM38O00635 AC073111.5-205ENST00000641717 521 ntBASIC21.37■■□□□ 1.01
TRIM38O00635 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM38O00635 AL353803.4-201ENST00000565882 1934 ntBASIC21.37■■□□□ 1.01
TRIM38O00635 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.37■■□□□ 1.01
TRIM38O00635 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
TRIM38O00635 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM38O00635 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM38O00635 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM38O00635 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
TRIM38O00635 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM38O00635 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.36■■□□□ 1.01
TRIM38O00635 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM38O00635 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.36■■□□□ 1.01
TRIM38O00635 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.36■■□□□ 1.01
TRIM38O00635 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.36■■□□□ 1.01
TRIM38O00635 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.36■■□□□ 1.01
TRIM38O00635 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM38O00635 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
TRIM38O00635 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM38O00635 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM38O00635 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM38O00635 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM38O00635 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM38O00635 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.35■■□□□ 1.01
TRIM38O00635 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM38O00635 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM38O00635 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM38O00635 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.35■■□□□ 1.01
TRIM38O00635 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM38O00635 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM38O00635 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM38O00635 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.35■■□□□ 1.01
TRIM38O00635 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.35■■□□□ 1.01
TRIM38O00635 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.35■■□□□ 1.01
TRIM38O00635 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM38O00635 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM38O00635 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM38O00635 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM38O00635 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM38O00635 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM38O00635 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM38O00635 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
TRIM38O00635 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM38O00635 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM38O00635 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM38O00635 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM38O00635 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
TRIM38O00635 AC010141.3-201ENST00000456659 717 ntBASIC21.34■■□□□ 1.01
TRIM38O00635 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.34■■□□□ 1.01
TRIM38O00635 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM38O00635 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM38O00635 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM38O00635 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.34■■□□□ 1.01
TRIM38O00635 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.34■■□□□ 1.01
TRIM38O00635 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.34■■□□□ 1.01
TRIM38O00635 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM38O00635 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM38O00635 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM38O00635 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
TRIM38O00635 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM38O00635 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM38O00635 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
TRIM38O00635 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM38O00635 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.33■■□□□ 1.01
TRIM38O00635 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.33■■□□□ 1.01
TRIM38O00635 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.33■■□□□ 1.01
TRIM38O00635 AC087239.1-201ENST00000622671 572 ntBASIC21.33■■□□□ 1.01
TRIM38O00635 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM38O00635 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
TRIM38O00635 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
TRIM38O00635 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.33■■□□□ 1
TRIM38O00635 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.33■■□□□ 1
TRIM38O00635 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM38O00635 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM38O00635 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TRIM38O00635 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM38O00635 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.32■■□□□ 1
TRIM38O00635 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM38O00635 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.32■■□□□ 1
TRIM38O00635 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRIM38O00635 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.32■■□□□ 1
TRIM38O00635 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRIM38O00635 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM38O00635 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.31■■□□□ 1
TRIM38O00635 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.31■■□□□ 1
TRIM38O00635 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.31■■□□□ 1
TRIM38O00635 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.31■■□□□ 1
TRIM38O00635 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms