Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USH1CQ9Y6N9 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USH1CQ9Y6N9 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
USH1CQ9Y6N9 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.18■□□□□ 0.98
USH1CQ9Y6N9 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
USH1CQ9Y6N9 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USH1CQ9Y6N9 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USH1CQ9Y6N9 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.18■□□□□ 0.98
USH1CQ9Y6N9 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.18■□□□□ 0.98
USH1CQ9Y6N9 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USH1CQ9Y6N9 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USH1CQ9Y6N9 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USH1CQ9Y6N9 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USH1CQ9Y6N9 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USH1CQ9Y6N9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.17■□□□□ 0.98
USH1CQ9Y6N9 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USH1CQ9Y6N9 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USH1CQ9Y6N9 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
USH1CQ9Y6N9 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
USH1CQ9Y6N9 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USH1CQ9Y6N9 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 AC137630.3-201ENST00000607245 391 ntBASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USH1CQ9Y6N9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USH1CQ9Y6N9 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.14■□□□□ 0.98
USH1CQ9Y6N9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.14■□□□□ 0.98
USH1CQ9Y6N9 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
USH1CQ9Y6N9 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USH1CQ9Y6N9 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
USH1CQ9Y6N9 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USH1CQ9Y6N9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USH1CQ9Y6N9 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USH1CQ9Y6N9 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.14■□□□□ 0.97
USH1CQ9Y6N9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USH1CQ9Y6N9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.14■□□□□ 0.97
USH1CQ9Y6N9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.14■□□□□ 0.97
USH1CQ9Y6N9 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.14■□□□□ 0.97
USH1CQ9Y6N9 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
USH1CQ9Y6N9 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
USH1CQ9Y6N9 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.13■□□□□ 0.97
USH1CQ9Y6N9 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USH1CQ9Y6N9 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms