Protein–RNA interactions for Protein: Q9UGM1

CHRNA9, Neuronal acetylcholine receptor subunit alpha-9, humanhuman

Predictions only

Length 479 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA9Q9UGM1 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHRNA9Q9UGM1 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.46■□□□□ 0.71
CHRNA9Q9UGM1 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHRNA9Q9UGM1 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHRNA9Q9UGM1 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CHRNA9Q9UGM1 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHRNA9Q9UGM1 AP004607.7-201ENST00000527152 1677 ntBASIC19.46■□□□□ 0.71
CHRNA9Q9UGM1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHRNA9Q9UGM1 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 AC244015.2-201ENST00000616358 1861 ntBASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHRNA9Q9UGM1 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHRNA9Q9UGM1 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CHRNA9Q9UGM1 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.42■□□□□ 0.7
CHRNA9Q9UGM1 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 IRS3P-201ENST00000223076 1006 ntBASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 AL354811.1-201ENST00000610286 706 ntBASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA9Q9UGM1 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA9Q9UGM1 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.4■□□□□ 0.7
CHRNA9Q9UGM1 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.4■□□□□ 0.7
CHRNA9Q9UGM1 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.4■□□□□ 0.7
CHRNA9Q9UGM1 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.4■□□□□ 0.7
CHRNA9Q9UGM1 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.4■□□□□ 0.7
CHRNA9Q9UGM1 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA9Q9UGM1 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.4■□□□□ 0.7
CHRNA9Q9UGM1 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.4■□□□□ 0.7
CHRNA9Q9UGM1 AC012414.1-201ENST00000556676 535 ntBASIC19.4■□□□□ 0.7
CHRNA9Q9UGM1 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.4■□□□□ 0.7
CHRNA9Q9UGM1 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms