Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC31.11■■■□□ 2.57
SENP3Q9H4L4 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC31.11■■■□□ 2.57
SENP3Q9H4L4 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3Q9H4L4 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC31.11■■■□□ 2.57
SENP3Q9H4L4 AP001160.3-201ENST00000601484 763 ntBASIC31.11■■■□□ 2.57
SENP3Q9H4L4 ITM2C-210ENST00000620962 501 ntBASIC31.11■■■□□ 2.57
SENP3Q9H4L4 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SENP3Q9H4L4 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC31.1■■■□□ 2.57
SENP3Q9H4L4 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SENP3Q9H4L4 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC31.1■■■□□ 2.57
SENP3Q9H4L4 QTRT2-209ENST00000479882 1196 ntTSL 2 BASIC31.1■■■□□ 2.57
SENP3Q9H4L4 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SENP3Q9H4L4 MYCNOS-205ENST00000641950 531 ntBASIC31.1■■■□□ 2.57
SENP3Q9H4L4 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3Q9H4L4 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC31.09■■■□□ 2.57
SENP3Q9H4L4 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
SENP3Q9H4L4 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC31.09■■■□□ 2.57
SENP3Q9H4L4 MTND1P31-201ENST00000449206 961 ntBASIC31.09■■■□□ 2.57
SENP3Q9H4L4 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3Q9H4L4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC31.09■■■□□ 2.57
SENP3Q9H4L4 AC079791.1-201ENST00000605356 973 ntBASIC31.09■■■□□ 2.57
SENP3Q9H4L4 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3Q9H4L4 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SENP3Q9H4L4 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
SENP3Q9H4L4 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC31.08■■■□□ 2.57
SENP3Q9H4L4 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC31.08■■■□□ 2.57
SENP3Q9H4L4 CNN2P6-201ENST00000439038 900 ntBASIC31.08■■■□□ 2.57
SENP3Q9H4L4 RNA5SP413-201ENST00000516373 109 ntBASIC31.08■■■□□ 2.57
SENP3Q9H4L4 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC31.08■■■□□ 2.57
SENP3Q9H4L4 AC097478.2-201ENST00000610572 514 ntBASIC31.08■■■□□ 2.57
SENP3Q9H4L4 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC31.08■■■□□ 2.57
SENP3Q9H4L4 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SENP3Q9H4L4 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC31.07■■■□□ 2.56
SENP3Q9H4L4 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC31.07■■■□□ 2.56
SENP3Q9H4L4 LINC02270-202ENST00000515691 541 ntTSL 3 BASIC31.07■■■□□ 2.56
SENP3Q9H4L4 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SENP3Q9H4L4 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SENP3Q9H4L4 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 MFSD8-213ENST00000641134 1327 ntBASIC31.06■■■□□ 2.56
SENP3Q9H4L4 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 SERP1-208ENST00000491660 830 ntTSL 2 BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 CASP6-205ENST00000505486 538 ntTSL 4 BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 AC010618.2-201ENST00000596192 460 ntTSL 3 BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 DUSP8P3-201ENST00000399571 1760 ntBASIC31.06■■■□□ 2.56
SENP3Q9H4L4 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SENP3Q9H4L4 IL4-201ENST00000231449 616 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SENP3Q9H4L4 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC31.05■■■□□ 2.56
SENP3Q9H4L4 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC31.05■■■□□ 2.56
SENP3Q9H4L4 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC31.05■■■□□ 2.56
SENP3Q9H4L4 MAPK10-223ENST00000511167 1265 ntTSL 5 BASIC31.05■■■□□ 2.56
SENP3Q9H4L4 AF201337.1-201ENST00000520239 748 ntBASIC31.05■■■□□ 2.56
SENP3Q9H4L4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SENP3Q9H4L4 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC31.05■■■□□ 2.56
SENP3Q9H4L4 IL4-204ENST00000622422 717 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SENP3Q9H4L4 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SENP3Q9H4L4 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC31.04■■■□□ 2.56
SENP3Q9H4L4 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC31.04■■■□□ 2.56
SENP3Q9H4L4 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
SENP3Q9H4L4 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC31.04■■■□□ 2.56
SENP3Q9H4L4 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
SENP3Q9H4L4 RHEB-204ENST00000472642 900 ntTSL 3 BASIC31.04■■■□□ 2.56
SENP3Q9H4L4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SENP3Q9H4L4 UCHL1-AS1-202ENST00000510073 451 ntTSL 3 BASIC31.04■■■□□ 2.56
SENP3Q9H4L4 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SENP3Q9H4L4 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC31.04■■■□□ 2.56
SENP3Q9H4L4 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SENP3Q9H4L4 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC31.04■■■□□ 2.56
SENP3Q9H4L4 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SENP3Q9H4L4 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC31.03■■■□□ 2.56
SENP3Q9H4L4 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC31.03■■■□□ 2.56
SENP3Q9H4L4 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
SENP3Q9H4L4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SENP3Q9H4L4 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
SENP3Q9H4L4 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC31.03■■■□□ 2.56
SENP3Q9H4L4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC31.03■■■□□ 2.56
SENP3Q9H4L4 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC31.03■■■□□ 2.56
SENP3Q9H4L4 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SENP3Q9H4L4 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC31.03■■■□□ 2.56
SENP3Q9H4L4 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 EED-207ENST00000528180 1745 ntTSL 5 BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 AC008507.2-201ENST00000588402 1176 ntBASIC31.02■■■□□ 2.56
SENP3Q9H4L4 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
SENP3Q9H4L4 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC31.02■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms