Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NUCKS1Q9H1E3 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NUCKS1Q9H1E3 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 MIR4767-201ENST00000582827 78 ntBASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 AC005837.3-201ENST00000612163 286 ntBASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
NUCKS1Q9H1E3 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NUCKS1Q9H1E3 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NUCKS1Q9H1E3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.08■■□□□ 1.29
NUCKS1Q9H1E3 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NUCKS1Q9H1E3 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.08■■□□□ 1.29
NUCKS1Q9H1E3 AL031432.3-201ENST00000607698 485 ntBASIC23.08■■□□□ 1.29
NUCKS1Q9H1E3 AC011298.3-201ENST00000615796 283 ntBASIC23.08■■□□□ 1.29
NUCKS1Q9H1E3 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.08■■□□□ 1.29
NUCKS1Q9H1E3 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
NUCKS1Q9H1E3 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
NUCKS1Q9H1E3 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
NUCKS1Q9H1E3 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.07■■□□□ 1.28
NUCKS1Q9H1E3 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NUCKS1Q9H1E3 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
NUCKS1Q9H1E3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NUCKS1Q9H1E3 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NUCKS1Q9H1E3 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
NUCKS1Q9H1E3 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NUCKS1Q9H1E3 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NUCKS1Q9H1E3 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NUCKS1Q9H1E3 AC019069.1-201ENST00000610008 1333 ntBASIC23.07■■□□□ 1.28
NUCKS1Q9H1E3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
NUCKS1Q9H1E3 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NUCKS1Q9H1E3 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NUCKS1Q9H1E3 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NUCKS1Q9H1E3 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.06■■□□□ 1.28
NUCKS1Q9H1E3 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.06■■□□□ 1.28
NUCKS1Q9H1E3 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.06■■□□□ 1.28
NUCKS1Q9H1E3 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.06■■□□□ 1.28
NUCKS1Q9H1E3 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.06■■□□□ 1.28
NUCKS1Q9H1E3 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC23.06■■□□□ 1.28
NUCKS1Q9H1E3 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NUCKS1Q9H1E3 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NUCKS1Q9H1E3 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 AP005435.1-201ENST00000529293 1178 ntBASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 AC010525.1-201ENST00000585559 441 ntBASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NUCKS1Q9H1E3 AL024507.2-201ENST00000606070 2574 ntBASIC23.04■■□□□ 1.28
NUCKS1Q9H1E3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.04■■□□□ 1.28
NUCKS1Q9H1E3 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC23.04■■□□□ 1.28
NUCKS1Q9H1E3 EDA-201ENST00000338901 1233 ntBASIC23.04■■□□□ 1.28
NUCKS1Q9H1E3 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.04■■□□□ 1.28
NUCKS1Q9H1E3 AC136469.2-201ENST00000623944 1028 ntBASIC23.04■■□□□ 1.28
NUCKS1Q9H1E3 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.04■■□□□ 1.28
NUCKS1Q9H1E3 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
NUCKS1Q9H1E3 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.04■■□□□ 1.28
NUCKS1Q9H1E3 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC23.03■■□□□ 1.28
NUCKS1Q9H1E3 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
NUCKS1Q9H1E3 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.02■■□□□ 1.28
NUCKS1Q9H1E3 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
NUCKS1Q9H1E3 AL355001.2-201ENST00000620617 1191 ntBASIC23.02■■□□□ 1.28
NUCKS1Q9H1E3 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NUCKS1Q9H1E3 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.02■■□□□ 1.28
NUCKS1Q9H1E3 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC23.02■■□□□ 1.28
NUCKS1Q9H1E3 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
NUCKS1Q9H1E3 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC23.01■■□□□ 1.27
NUCKS1Q9H1E3 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NUCKS1Q9H1E3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.01■■□□□ 1.27
NUCKS1Q9H1E3 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NUCKS1Q9H1E3 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms