Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 SERBP1P1-201ENST00000396021 1160 ntBASIC21.09■□□□□ 0.97
TRIM4Q9C037 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM4Q9C037 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.09■□□□□ 0.97
TRIM4Q9C037 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.09■□□□□ 0.97
TRIM4Q9C037 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM4Q9C037 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM4Q9C037 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM4Q9C037 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
TRIM4Q9C037 AC007952.6-201ENST00000573168 2673 ntBASIC21.09■□□□□ 0.97
TRIM4Q9C037 AC003957.1-201ENST00000625108 2673 ntBASIC21.09■□□□□ 0.97
TRIM4Q9C037 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM4Q9C037 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
TRIM4Q9C037 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM4Q9C037 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM4Q9C037 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM4Q9C037 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM4Q9C037 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM4Q9C037 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM4Q9C037 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM4Q9C037 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.08■□□□□ 0.97
TRIM4Q9C037 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.08■□□□□ 0.96
TRIM4Q9C037 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.08■□□□□ 0.96
TRIM4Q9C037 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM4Q9C037 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM4Q9C037 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM4Q9C037 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
TRIM4Q9C037 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
TRIM4Q9C037 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.07■□□□□ 0.96
TRIM4Q9C037 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
TRIM4Q9C037 AL031602.1-201ENST00000633169 911 ntBASIC21.07■□□□□ 0.96
TRIM4Q9C037 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
TRIM4Q9C037 AL353803.4-201ENST00000565882 1934 ntBASIC21.07■□□□□ 0.96
TRIM4Q9C037 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
TRIM4Q9C037 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.06■□□□□ 0.96
TRIM4Q9C037 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM4Q9C037 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM4Q9C037 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM4Q9C037 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.06■□□□□ 0.96
TRIM4Q9C037 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
TRIM4Q9C037 HLA-L-209ENST00000420110 1011 ntBASIC21.06■□□□□ 0.96
TRIM4Q9C037 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
TRIM4Q9C037 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.06■□□□□ 0.96
TRIM4Q9C037 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.06■□□□□ 0.96
TRIM4Q9C037 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM4Q9C037 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM4Q9C037 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
TRIM4Q9C037 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM4Q9C037 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM4Q9C037 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM4Q9C037 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM4Q9C037 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.05■□□□□ 0.96
TRIM4Q9C037 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM4Q9C037 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM4Q9C037 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
TRIM4Q9C037 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM4Q9C037 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TRIM4Q9C037 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM4Q9C037 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM4Q9C037 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM4Q9C037 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM4Q9C037 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
TRIM4Q9C037 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM4Q9C037 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM4Q9C037 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM4Q9C037 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM4Q9C037 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM4Q9C037 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM4Q9C037 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM4Q9C037 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.03■□□□□ 0.96
TRIM4Q9C037 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.03■□□□□ 0.96
TRIM4Q9C037 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM4Q9C037 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM4Q9C037 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.03■□□□□ 0.96
TRIM4Q9C037 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TRIM4Q9C037 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM4Q9C037 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TRIM4Q9C037 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
TRIM4Q9C037 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM4Q9C037 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM4Q9C037 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM4Q9C037 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM4Q9C037 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
TRIM4Q9C037 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM4Q9C037 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms