Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC18.55■□□□□ 0.56
NKX3-1Q99801 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NKX3-1Q99801 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
NKX3-1Q99801 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX3-1Q99801 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX3-1Q99801 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX3-1Q99801 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
NKX3-1Q99801 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.55■□□□□ 0.56
NKX3-1Q99801 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.55■□□□□ 0.56
NKX3-1Q99801 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX3-1Q99801 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NKX3-1Q99801 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.54■□□□□ 0.56
NKX3-1Q99801 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NKX3-1Q99801 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
NKX3-1Q99801 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NKX3-1Q99801 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
NKX3-1Q99801 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NKX3-1Q99801 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
NKX3-1Q99801 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.54■□□□□ 0.56
NKX3-1Q99801 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.54■□□□□ 0.56
NKX3-1Q99801 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.54■□□□□ 0.56
NKX3-1Q99801 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.54■□□□□ 0.56
NKX3-1Q99801 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC18.54■□□□□ 0.56
NKX3-1Q99801 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.54■□□□□ 0.56
NKX3-1Q99801 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NKX3-1Q99801 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NKX3-1Q99801 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NKX3-1Q99801 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.54■□□□□ 0.56
NKX3-1Q99801 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NKX3-1Q99801 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NKX3-1Q99801 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NKX3-1Q99801 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
NKX3-1Q99801 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.53■□□□□ 0.56
NKX3-1Q99801 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.53■□□□□ 0.56
NKX3-1Q99801 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC18.53■□□□□ 0.56
NKX3-1Q99801 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.53■□□□□ 0.56
NKX3-1Q99801 MIR6724-1-201ENST00000616420 92 ntBASIC18.53■□□□□ 0.56
NKX3-1Q99801 MIR6724-2-201ENST00000616483 92 ntBASIC18.53■□□□□ 0.56
NKX3-1Q99801 MIR6724-4-201ENST00000617390 92 ntBASIC18.53■□□□□ 0.56
NKX3-1Q99801 MIR6724-3-201ENST00000622482 92 ntBASIC18.53■□□□□ 0.56
NKX3-1Q99801 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
NKX3-1Q99801 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NKX3-1Q99801 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.53■□□□□ 0.56
NKX3-1Q99801 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NKX3-1Q99801 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.53■□□□□ 0.56
NKX3-1Q99801 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
NKX3-1Q99801 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.53■□□□□ 0.56
NKX3-1Q99801 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
NKX3-1Q99801 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
NKX3-1Q99801 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
NKX3-1Q99801 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.52■□□□□ 0.56
NKX3-1Q99801 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
NKX3-1Q99801 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
NKX3-1Q99801 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.52■□□□□ 0.56
NKX3-1Q99801 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NKX3-1Q99801 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NKX3-1Q99801 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
NKX3-1Q99801 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NKX3-1Q99801 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.52■□□□□ 0.56
NKX3-1Q99801 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC18.52■□□□□ 0.56
NKX3-1Q99801 AC099791.2-201ENST00000605725 427 ntBASIC18.52■□□□□ 0.56
NKX3-1Q99801 AL031602.1-201ENST00000633169 911 ntBASIC18.52■□□□□ 0.56
NKX3-1Q99801 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.52■□□□□ 0.56
NKX3-1Q99801 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
NKX3-1Q99801 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.52■□□□□ 0.55
NKX3-1Q99801 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
NKX3-1Q99801 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.52■□□□□ 0.55
NKX3-1Q99801 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NKX3-1Q99801 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NKX3-1Q99801 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NKX3-1Q99801 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NKX3-1Q99801 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
NKX3-1Q99801 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
NKX3-1Q99801 TRIR-202ENST00000588213 841 ntTSL 3 BASIC18.51■□□□□ 0.55
NKX3-1Q99801 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.51■□□□□ 0.55
NKX3-1Q99801 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NKX3-1Q99801 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NKX3-1Q99801 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NKX3-1Q99801 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
NKX3-1Q99801 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NKX3-1Q99801 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
NKX3-1Q99801 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.5■□□□□ 0.55
NKX3-1Q99801 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
NKX3-1Q99801 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
NKX3-1Q99801 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
NKX3-1Q99801 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC18.5■□□□□ 0.55
NKX3-1Q99801 AC079089.2-201ENST00000531211 1277 ntBASIC18.5■□□□□ 0.55
NKX3-1Q99801 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.5■□□□□ 0.55
NKX3-1Q99801 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
NKX3-1Q99801 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.5■□□□□ 0.55
NKX3-1Q99801 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.5■□□□□ 0.55
NKX3-1Q99801 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.5■□□□□ 0.55
NKX3-1Q99801 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NKX3-1Q99801 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
NKX3-1Q99801 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
NKX3-1Q99801 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
NKX3-1Q99801 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NKX3-1Q99801 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
NKX3-1Q99801 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NKX3-1Q99801 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms