Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 RN7SL850P-201ENST00000579959 291 ntBASIC21.37■■□□□ 1.01
VPS13AQ96RL7 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 AC012306.2-201ENST00000609350 630 ntBASIC21.37■■□□□ 1.01
VPS13AQ96RL7 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS13AQ96RL7 REXO1L12P-201ENST00000622156 912 ntBASIC21.36■■□□□ 1.01
VPS13AQ96RL7 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.36■■□□□ 1.01
VPS13AQ96RL7 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS13AQ96RL7 OXCT2P1-201ENST00000447263 1535 ntBASIC21.36■■□□□ 1.01
VPS13AQ96RL7 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.36■■□□□ 1.01
VPS13AQ96RL7 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS13AQ96RL7 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS13AQ96RL7 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.36■■□□□ 1.01
VPS13AQ96RL7 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS13AQ96RL7 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS13AQ96RL7 C1QBPP2-201ENST00000528754 825 ntBASIC21.36■■□□□ 1.01
VPS13AQ96RL7 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.36■■□□□ 1.01
VPS13AQ96RL7 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
VPS13AQ96RL7 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 AC010141.2-201ENST00000452426 721 ntBASIC21.35■■□□□ 1.01
VPS13AQ96RL7 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VPS13AQ96RL7 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 KRT18P20-201ENST00000548986 1279 ntBASIC21.34■■□□□ 1.01
VPS13AQ96RL7 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 AC233263.1-201ENST00000578059 224 ntBASIC21.34■■□□□ 1.01
VPS13AQ96RL7 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 AC010980.2-201ENST00000587099 1412 ntBASIC21.34■■□□□ 1.01
VPS13AQ96RL7 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VPS13AQ96RL7 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS13AQ96RL7 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS13AQ96RL7 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.33■■□□□ 1.01
VPS13AQ96RL7 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS13AQ96RL7 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.33■■□□□ 1.01
VPS13AQ96RL7 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS13AQ96RL7 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS13AQ96RL7 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.33■■□□□ 1
VPS13AQ96RL7 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC21.33■■□□□ 1
VPS13AQ96RL7 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.33■■□□□ 1
VPS13AQ96RL7 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS13AQ96RL7 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS13AQ96RL7 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
VPS13AQ96RL7 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.32■■□□□ 1
VPS13AQ96RL7 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.32■■□□□ 1
VPS13AQ96RL7 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS13AQ96RL7 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS13AQ96RL7 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS13AQ96RL7 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS13AQ96RL7 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS13AQ96RL7 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS13AQ96RL7 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
VPS13AQ96RL7 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
VPS13AQ96RL7 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS13AQ96RL7 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
VPS13AQ96RL7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.32■■□□□ 1
VPS13AQ96RL7 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
VPS13AQ96RL7 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS13AQ96RL7 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.32■■□□□ 1
VPS13AQ96RL7 C2orf69P4-201ENST00000565394 541 ntBASIC21.32■■□□□ 1
VPS13AQ96RL7 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.32■■□□□ 1
VPS13AQ96RL7 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.32■■□□□ 1
VPS13AQ96RL7 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS13AQ96RL7 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
VPS13AQ96RL7 FAM197Y4-202ENST00000622692 608 ntBASIC21.31■■□□□ 1
VPS13AQ96RL7 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS13AQ96RL7 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
VPS13AQ96RL7 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS13AQ96RL7 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms