Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SKA1Q96BD8 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.85■■□□□ 1.09
SKA1Q96BD8 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.85■■□□□ 1.09
SKA1Q96BD8 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.85■■□□□ 1.09
SKA1Q96BD8 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.85■■□□□ 1.09
SKA1Q96BD8 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SKA1Q96BD8 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SKA1Q96BD8 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SKA1Q96BD8 AC080038.3-201ENST00000623346 1952 ntBASIC21.85■■□□□ 1.09
SKA1Q96BD8 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SKA1Q96BD8 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SKA1Q96BD8 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.84■■□□□ 1.09
SKA1Q96BD8 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
SKA1Q96BD8 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.84■■□□□ 1.09
SKA1Q96BD8 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.84■■□□□ 1.09
SKA1Q96BD8 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SKA1Q96BD8 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
SKA1Q96BD8 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SKA1Q96BD8 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
SKA1Q96BD8 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
SKA1Q96BD8 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
SKA1Q96BD8 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.83■■□□□ 1.09
SKA1Q96BD8 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
SKA1Q96BD8 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
SKA1Q96BD8 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SKA1Q96BD8 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SKA1Q96BD8 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.83■■□□□ 1.09
SKA1Q96BD8 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.83■■□□□ 1.09
SKA1Q96BD8 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.83■■□□□ 1.09
SKA1Q96BD8 AC087239.1-201ENST00000622671 572 ntBASIC21.83■■□□□ 1.09
SKA1Q96BD8 AC092437.1-201ENST00000624794 1048 ntBASIC21.83■■□□□ 1.09
SKA1Q96BD8 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.08
SKA1Q96BD8 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SKA1Q96BD8 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
SKA1Q96BD8 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SKA1Q96BD8 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SKA1Q96BD8 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SKA1Q96BD8 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
SKA1Q96BD8 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SKA1Q96BD8 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
SKA1Q96BD8 AC026310.3-201ENST00000625186 2373 ntBASIC21.82■■□□□ 1.08
SKA1Q96BD8 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.82■■□□□ 1.08
SKA1Q96BD8 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SKA1Q96BD8 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SKA1Q96BD8 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
SKA1Q96BD8 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SKA1Q96BD8 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.82■■□□□ 1.08
SKA1Q96BD8 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SKA1Q96BD8 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SKA1Q96BD8 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
SKA1Q96BD8 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SKA1Q96BD8 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.81■■□□□ 1.08
SKA1Q96BD8 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
SKA1Q96BD8 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SKA1Q96BD8 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.81■■□□□ 1.08
SKA1Q96BD8 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.81■■□□□ 1.08
SKA1Q96BD8 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.81■■□□□ 1.08
SKA1Q96BD8 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.81■■□□□ 1.08
SKA1Q96BD8 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.81■■□□□ 1.08
SKA1Q96BD8 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
SKA1Q96BD8 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.81■■□□□ 1.08
SKA1Q96BD8 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SKA1Q96BD8 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
SKA1Q96BD8 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SKA1Q96BD8 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SKA1Q96BD8 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
SKA1Q96BD8 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.8■■□□□ 1.08
SKA1Q96BD8 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SKA1Q96BD8 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.8■■□□□ 1.08
SKA1Q96BD8 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SKA1Q96BD8 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SKA1Q96BD8 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
SKA1Q96BD8 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.8■■□□□ 1.08
SKA1Q96BD8 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SKA1Q96BD8 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SKA1Q96BD8 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SKA1Q96BD8 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SKA1Q96BD8 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
SKA1Q96BD8 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SKA1Q96BD8 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SKA1Q96BD8 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SKA1Q96BD8 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.79■■□□□ 1.08
SKA1Q96BD8 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SKA1Q96BD8 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.79■■□□□ 1.08
SKA1Q96BD8 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.79■■□□□ 1.08
SKA1Q96BD8 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SKA1Q96BD8 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.79■■□□□ 1.08
SKA1Q96BD8 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SKA1Q96BD8 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SKA1Q96BD8 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SKA1Q96BD8 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
SKA1Q96BD8 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.78■■□□□ 1.08
SKA1Q96BD8 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
SKA1Q96BD8 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
SKA1Q96BD8 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.78■■□□□ 1.08
SKA1Q96BD8 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.78■■□□□ 1.08
SKA1Q96BD8 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.78■■□□□ 1.08
SKA1Q96BD8 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.78■■□□□ 1.08
SKA1Q96BD8 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.78■■□□□ 1.08
SKA1Q96BD8 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms