Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TTC28Q96AY4 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
TTC28Q96AY4 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
TTC28Q96AY4 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC22.07■■□□□ 1.12
TTC28Q96AY4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TTC28Q96AY4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TTC28Q96AY4 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC22.07■■□□□ 1.12
TTC28Q96AY4 AC135731.1-201ENST00000569415 2548 ntBASIC22.07■■□□□ 1.12
TTC28Q96AY4 RBM42-202ENST00000586618 771 ntTSL 3 BASIC22.07■■□□□ 1.12
TTC28Q96AY4 AC060766.5-201ENST00000590539 871 ntBASIC22.07■■□□□ 1.12
TTC28Q96AY4 AC145285.6-201ENST00000604632 637 ntBASIC22.07■■□□□ 1.12
TTC28Q96AY4 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TTC28Q96AY4 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
TTC28Q96AY4 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
TTC28Q96AY4 DUSP8P5-201ENST00000422884 1815 ntBASIC22.07■■□□□ 1.12
TTC28Q96AY4 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TTC28Q96AY4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC22.06■■□□□ 1.12
TTC28Q96AY4 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC22.06■■□□□ 1.12
TTC28Q96AY4 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.06■■□□□ 1.12
TTC28Q96AY4 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TTC28Q96AY4 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
TTC28Q96AY4 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TTC28Q96AY4 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC22.06■■□□□ 1.12
TTC28Q96AY4 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TTC28Q96AY4 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TTC28Q96AY4 SOX15-203ENST00000570788 1093 ntBASIC22.06■■□□□ 1.12
TTC28Q96AY4 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.06■■□□□ 1.12
TTC28Q96AY4 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
TTC28Q96AY4 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TTC28Q96AY4 KRT17P3-201ENST00000420566 1262 ntBASIC22.05■■□□□ 1.12
TTC28Q96AY4 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TTC28Q96AY4 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
TTC28Q96AY4 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.05■■□□□ 1.12
TTC28Q96AY4 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC22.05■■□□□ 1.12
TTC28Q96AY4 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TTC28Q96AY4 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC22.05■■□□□ 1.12
TTC28Q96AY4 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC22.05■■□□□ 1.12
TTC28Q96AY4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.05■■□□□ 1.12
TTC28Q96AY4 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC22.05■■□□□ 1.12
TTC28Q96AY4 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TTC28Q96AY4 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC22.04■■□□□ 1.12
TTC28Q96AY4 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC22.04■■□□□ 1.12
TTC28Q96AY4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC22.04■■□□□ 1.12
TTC28Q96AY4 P4HB-223ENST00000576390 439 ntTSL 4 BASIC22.04■■□□□ 1.12
TTC28Q96AY4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TTC28Q96AY4 OXCT2P1-201ENST00000447263 1535 ntBASIC22.04■■□□□ 1.12
TTC28Q96AY4 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
TTC28Q96AY4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TTC28Q96AY4 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC22.04■■□□□ 1.12
TTC28Q96AY4 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TTC28Q96AY4 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
TTC28Q96AY4 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC22.04■■□□□ 1.12
TTC28Q96AY4 KRT18P57-201ENST00000443599 1254 ntBASIC22.04■■□□□ 1.12
TTC28Q96AY4 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC22.04■■□□□ 1.12
TTC28Q96AY4 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TTC28Q96AY4 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC22.04■■□□□ 1.12
TTC28Q96AY4 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
TTC28Q96AY4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TTC28Q96AY4 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC22.03■■□□□ 1.12
TTC28Q96AY4 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC22.03■■□□□ 1.12
TTC28Q96AY4 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC22.03■■□□□ 1.12
TTC28Q96AY4 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TTC28Q96AY4 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
TTC28Q96AY4 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TTC28Q96AY4 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
TTC28Q96AY4 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
TTC28Q96AY4 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
TTC28Q96AY4 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC22.02■■□□□ 1.12
TTC28Q96AY4 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 HLA-B-256ENST00000639848 1089 ntBASIC22.02■■□□□ 1.12
TTC28Q96AY4 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.02■■□□□ 1.12
TTC28Q96AY4 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
TTC28Q96AY4 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.02■■□□□ 1.12
TTC28Q96AY4 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC22.02■■□□□ 1.12
TTC28Q96AY4 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TTC28Q96AY4 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
TTC28Q96AY4 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TTC28Q96AY4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TTC28Q96AY4 HLA-L-211ENST00000482052 1765 ntBASIC22.01■■□□□ 1.11
TTC28Q96AY4 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
TTC28Q96AY4 AC113347.1-201ENST00000413321 391 ntBASIC22.01■■□□□ 1.11
TTC28Q96AY4 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC22.01■■□□□ 1.11
TTC28Q96AY4 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC22.01■■□□□ 1.11
TTC28Q96AY4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TTC28Q96AY4 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC22.01■■□□□ 1.11
TTC28Q96AY4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC22.01■■□□□ 1.11
TTC28Q96AY4 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
TTC28Q96AY4 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TTC28Q96AY4 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms