Protein–RNA interactions for Protein: Q8WWI5

SLC44A1, Choline transporter-like protein 1, humanhuman

Predictions only

Length 657 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A1Q8WWI5 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 AC010525.1-201ENST00000585559 441 ntBASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A1Q8WWI5 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 AL356740.2-201ENST00000601559 647 ntBASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A1Q8WWI5 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 AC003102.1-202ENST00000563394 1796 ntBASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 AL049796.1-201ENST00000565336 1766 ntBASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 AL034346.1-201ENST00000568244 1277 ntBASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 MIR3621-201ENST00000580529 85 ntBASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SLC44A1Q8WWI5 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.35■■□□□ 1.01
SLC44A1Q8WWI5 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A1Q8WWI5 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A1Q8WWI5 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A1Q8WWI5 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A1Q8WWI5 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A1Q8WWI5 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A1Q8WWI5 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.35■■□□□ 1.01
SLC44A1Q8WWI5 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A1Q8WWI5 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.34■■□□□ 1.01
SLC44A1Q8WWI5 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SLC44A1Q8WWI5 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
SLC44A1Q8WWI5 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
SLC44A1Q8WWI5 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.33■■□□□ 1.01
SLC44A1Q8WWI5 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.33■■□□□ 1.01
SLC44A1Q8WWI5 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SLC44A1Q8WWI5 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.33■■□□□ 1.01
SLC44A1Q8WWI5 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
SLC44A1Q8WWI5 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
SLC44A1Q8WWI5 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.33■■□□□ 1
SLC44A1Q8WWI5 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SLC44A1Q8WWI5 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.33■■□□□ 1
SLC44A1Q8WWI5 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.33■■□□□ 1
SLC44A1Q8WWI5 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.33■■□□□ 1
SLC44A1Q8WWI5 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SLC44A1Q8WWI5 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
SLC44A1Q8WWI5 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.32■■□□□ 1
SLC44A1Q8WWI5 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
SLC44A1Q8WWI5 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.32■■□□□ 1
SLC44A1Q8WWI5 AC092171.4-201ENST00000609130 632 ntBASIC21.32■■□□□ 1
SLC44A1Q8WWI5 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.32■■□□□ 1
SLC44A1Q8WWI5 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.32■■□□□ 1
SLC44A1Q8WWI5 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms