Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.87
CLHC1Q8NHS4 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 DUX4L19-201ENST00000557448 1267 ntBASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLHC1Q8NHS4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 AC011298.3-201ENST00000615796 283 ntBASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLHC1Q8NHS4 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLHC1Q8NHS4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLHC1Q8NHS4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLHC1Q8NHS4 AL136116.3-201ENST00000402907 1138 ntBASIC20.43■□□□□ 0.86
CLHC1Q8NHS4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.43■□□□□ 0.86
CLHC1Q8NHS4 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLHC1Q8NHS4 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLHC1Q8NHS4 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLHC1Q8NHS4 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLHC1Q8NHS4 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.43■□□□□ 0.86
CLHC1Q8NHS4 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.42■□□□□ 0.86
CLHC1Q8NHS4 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLHC1Q8NHS4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CLHC1Q8NHS4 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
CLHC1Q8NHS4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.42■□□□□ 0.86
CLHC1Q8NHS4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLHC1Q8NHS4 FEM1AP4-201ENST00000443167 1987 ntBASIC20.42■□□□□ 0.86
CLHC1Q8NHS4 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLHC1Q8NHS4 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.42■□□□□ 0.86
CLHC1Q8NHS4 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLHC1Q8NHS4 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.42■□□□□ 0.86
CLHC1Q8NHS4 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.41■□□□□ 0.86
CLHC1Q8NHS4 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 AC104564.3-201ENST00000582367 638 ntBASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.4■□□□□ 0.86
CLHC1Q8NHS4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CLHC1Q8NHS4 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.39■□□□□ 0.86
CLHC1Q8NHS4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLHC1Q8NHS4 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.39■□□□□ 0.86
CLHC1Q8NHS4 AP004607.7-201ENST00000527152 1677 ntBASIC20.39■□□□□ 0.86
CLHC1Q8NHS4 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CLHC1Q8NHS4 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLHC1Q8NHS4 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLHC1Q8NHS4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.39■□□□□ 0.85
CLHC1Q8NHS4 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.39■□□□□ 0.85
CLHC1Q8NHS4 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLHC1Q8NHS4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLHC1Q8NHS4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.39■□□□□ 0.85
CLHC1Q8NHS4 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLHC1Q8NHS4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLHC1Q8NHS4 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.39■□□□□ 0.85
CLHC1Q8NHS4 AL024507.2-201ENST00000606070 2574 ntBASIC20.39■□□□□ 0.85
CLHC1Q8NHS4 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLHC1Q8NHS4 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.38■□□□□ 0.85
CLHC1Q8NHS4 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLHC1Q8NHS4 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.38■□□□□ 0.85
CLHC1Q8NHS4 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms