Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
VRK3Q8IV63 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VRK3Q8IV63 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VRK3Q8IV63 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.92■□□□□ 0.94
VRK3Q8IV63 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VRK3Q8IV63 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
VRK3Q8IV63 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.92■□□□□ 0.94
VRK3Q8IV63 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VRK3Q8IV63 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VRK3Q8IV63 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
VRK3Q8IV63 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
VRK3Q8IV63 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
VRK3Q8IV63 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VRK3Q8IV63 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
VRK3Q8IV63 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
VRK3Q8IV63 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VRK3Q8IV63 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VRK3Q8IV63 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
VRK3Q8IV63 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
VRK3Q8IV63 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
VRK3Q8IV63 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VRK3Q8IV63 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
VRK3Q8IV63 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VRK3Q8IV63 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.9■□□□□ 0.94
VRK3Q8IV63 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.9■□□□□ 0.94
VRK3Q8IV63 YBX1P1-201ENST00000445822 960 ntBASIC20.9■□□□□ 0.94
VRK3Q8IV63 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.9■□□□□ 0.94
VRK3Q8IV63 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VRK3Q8IV63 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VRK3Q8IV63 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.9■□□□□ 0.94
VRK3Q8IV63 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VRK3Q8IV63 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.9■□□□□ 0.94
VRK3Q8IV63 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.9■□□□□ 0.94
VRK3Q8IV63 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.9■□□□□ 0.94
VRK3Q8IV63 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
VRK3Q8IV63 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
VRK3Q8IV63 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
VRK3Q8IV63 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
VRK3Q8IV63 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.89■□□□□ 0.94
VRK3Q8IV63 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
VRK3Q8IV63 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.89■□□□□ 0.94
VRK3Q8IV63 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.89■□□□□ 0.93
VRK3Q8IV63 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VRK3Q8IV63 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.89■□□□□ 0.93
VRK3Q8IV63 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VRK3Q8IV63 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VRK3Q8IV63 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VRK3Q8IV63 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VRK3Q8IV63 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VRK3Q8IV63 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.89■□□□□ 0.93
VRK3Q8IV63 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.93
VRK3Q8IV63 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
VRK3Q8IV63 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VRK3Q8IV63 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VRK3Q8IV63 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.88■□□□□ 0.93
VRK3Q8IV63 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VRK3Q8IV63 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
VRK3Q8IV63 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
VRK3Q8IV63 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VRK3Q8IV63 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VRK3Q8IV63 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
VRK3Q8IV63 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
VRK3Q8IV63 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.88■□□□□ 0.93
VRK3Q8IV63 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VRK3Q8IV63 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
VRK3Q8IV63 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
VRK3Q8IV63 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.87■□□□□ 0.93
VRK3Q8IV63 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
VRK3Q8IV63 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
VRK3Q8IV63 LINC02228-203ENST00000641970 1355 ntBASIC20.87■□□□□ 0.93
VRK3Q8IV63 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.87■□□□□ 0.93
VRK3Q8IV63 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
VRK3Q8IV63 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VRK3Q8IV63 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VRK3Q8IV63 AC123595.1-201ENST00000440769 1046 ntBASIC20.87■□□□□ 0.93
VRK3Q8IV63 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.87■□□□□ 0.93
VRK3Q8IV63 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.87■□□□□ 0.93
VRK3Q8IV63 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.87■□□□□ 0.93
VRK3Q8IV63 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.87■□□□□ 0.93
VRK3Q8IV63 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
VRK3Q8IV63 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.87■□□□□ 0.93
VRK3Q8IV63 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
VRK3Q8IV63 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.86■□□□□ 0.93
VRK3Q8IV63 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.86■□□□□ 0.93
VRK3Q8IV63 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.86■□□□□ 0.93
VRK3Q8IV63 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.86■□□□□ 0.93
VRK3Q8IV63 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 CCDC92B-201ENST00000575506 885 ntBASIC20.86■□□□□ 0.93
VRK3Q8IV63 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.86■□□□□ 0.93
VRK3Q8IV63 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms