Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.3■■□□□ 1
LDB1Q86U70 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.3■■□□□ 1
LDB1Q86U70 AC105233.4-201ENST00000642045 216 ntBASIC21.3■■□□□ 1
LDB1Q86U70 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.3■■□□□ 1
LDB1Q86U70 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.3■■□□□ 1
LDB1Q86U70 AC244015.2-201ENST00000616358 1861 ntBASIC21.3■■□□□ 1
LDB1Q86U70 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LDB1Q86U70 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.3■■□□□ 1
LDB1Q86U70 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LDB1Q86U70 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.29■■□□□ 1
LDB1Q86U70 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LDB1Q86U70 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
LDB1Q86U70 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
LDB1Q86U70 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
LDB1Q86U70 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.29■■□□□ 1
LDB1Q86U70 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.29■■□□□ 1
LDB1Q86U70 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LDB1Q86U70 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.29■■□□□ 1
LDB1Q86U70 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.29■■□□□ 1
LDB1Q86U70 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.29■■□□□ 1
LDB1Q86U70 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
LDB1Q86U70 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.29■■□□□ 1
LDB1Q86U70 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.29■■□□□ 1
LDB1Q86U70 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.29■■□□□ 1
LDB1Q86U70 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.28■■□□□ 1
LDB1Q86U70 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LDB1Q86U70 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LDB1Q86U70 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
LDB1Q86U70 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.28■■□□□ 1
LDB1Q86U70 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.28■■□□□ 1
LDB1Q86U70 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.28■■□□□ 1
LDB1Q86U70 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.28■■□□□ 1
LDB1Q86U70 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LDB1Q86U70 AC003102.1-202ENST00000563394 1796 ntBASIC21.28■■□□□ 1
LDB1Q86U70 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LDB1Q86U70 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LDB1Q86U70 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LDB1Q86U70 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LDB1Q86U70 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LDB1Q86U70 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.27■■□□□ 1
LDB1Q86U70 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LDB1Q86U70 MIR638-201ENST00000385237 100 ntBASIC21.27■■□□□ 1
LDB1Q86U70 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.27■■□□□ 1
LDB1Q86U70 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.27■■□□□ 1
LDB1Q86U70 AL034346.1-201ENST00000568244 1277 ntBASIC21.27■■□□□ 1
LDB1Q86U70 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LDB1Q86U70 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.27■■□□□ 1
LDB1Q86U70 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.27■■□□□ 1
LDB1Q86U70 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.27■■□□□ 1
LDB1Q86U70 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.27■□□□□ 0.99
LDB1Q86U70 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDB1Q86U70 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.26■□□□□ 0.99
LDB1Q86U70 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.26■□□□□ 0.99
LDB1Q86U70 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDB1Q86U70 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.26■□□□□ 0.99
LDB1Q86U70 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDB1Q86U70 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDB1Q86U70 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.26■□□□□ 0.99
LDB1Q86U70 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.26■□□□□ 0.99
LDB1Q86U70 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDB1Q86U70 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDB1Q86U70 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.26■□□□□ 0.99
LDB1Q86U70 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LDB1Q86U70 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LDB1Q86U70 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDB1Q86U70 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LDB1Q86U70 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.25■□□□□ 0.99
LDB1Q86U70 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LDB1Q86U70 AP006587.3-201ENST00000525742 1516 ntBASIC21.25■□□□□ 0.99
LDB1Q86U70 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.25■□□□□ 0.99
LDB1Q86U70 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.25■□□□□ 0.99
LDB1Q86U70 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDB1Q86U70 MIR572-201ENST00000384983 95 ntBASIC21.25■□□□□ 0.99
LDB1Q86U70 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.25■□□□□ 0.99
LDB1Q86U70 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDB1Q86U70 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.25■□□□□ 0.99
LDB1Q86U70 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.25■□□□□ 0.99
LDB1Q86U70 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.25■□□□□ 0.99
LDB1Q86U70 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.25■□□□□ 0.99
LDB1Q86U70 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LDB1Q86U70 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LDB1Q86U70 Z98882.1-201ENST00000622160 2253 ntBASIC21.25■□□□□ 0.99
LDB1Q86U70 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LDB1Q86U70 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
LDB1Q86U70 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB1Q86U70 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB1Q86U70 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
LDB1Q86U70 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB1Q86U70 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB1Q86U70 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB1Q86U70 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.24■□□□□ 0.99
LDB1Q86U70 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB1Q86U70 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
LDB1Q86U70 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB1Q86U70 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB1Q86U70 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB1Q86U70 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LDB1Q86U70 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
LDB1Q86U70 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.23■□□□□ 0.99
LDB1Q86U70 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms