Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC24.74■■□□□ 1.55
KRT40Q6A162 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
KRT40Q6A162 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
KRT40Q6A162 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
KRT40Q6A162 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC24.74■■□□□ 1.55
KRT40Q6A162 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
KRT40Q6A162 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
KRT40Q6A162 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
KRT40Q6A162 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
KRT40Q6A162 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
KRT40Q6A162 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
KRT40Q6A162 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC24.73■■□□□ 1.55
KRT40Q6A162 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC24.73■■□□□ 1.55
KRT40Q6A162 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC24.73■■□□□ 1.55
KRT40Q6A162 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
KRT40Q6A162 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC24.73■■□□□ 1.55
KRT40Q6A162 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
KRT40Q6A162 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
KRT40Q6A162 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC24.73■■□□□ 1.55
KRT40Q6A162 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
KRT40Q6A162 DENND3-207ENST00000518347 850 ntTSL 2 BASIC24.73■■□□□ 1.55
KRT40Q6A162 AL034346.1-201ENST00000568244 1277 ntBASIC24.73■■□□□ 1.55
KRT40Q6A162 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
KRT40Q6A162 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC24.73■■□□□ 1.55
KRT40Q6A162 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC24.72■■□□□ 1.55
KRT40Q6A162 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
KRT40Q6A162 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
KRT40Q6A162 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
KRT40Q6A162 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
KRT40Q6A162 KRT18P5-201ENST00000436075 1291 ntBASIC24.72■■□□□ 1.55
KRT40Q6A162 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC24.72■■□□□ 1.55
KRT40Q6A162 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
KRT40Q6A162 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC24.72■■□□□ 1.55
KRT40Q6A162 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
KRT40Q6A162 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC24.71■■□□□ 1.55
KRT40Q6A162 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
KRT40Q6A162 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
KRT40Q6A162 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
KRT40Q6A162 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC24.71■■□□□ 1.55
KRT40Q6A162 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
KRT40Q6A162 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC24.71■■□□□ 1.55
KRT40Q6A162 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
KRT40Q6A162 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
KRT40Q6A162 AC244015.2-201ENST00000616358 1861 ntBASIC24.7■■□□□ 1.55
KRT40Q6A162 ASL-203ENST00000380839 1765 ntTSL 5 BASIC24.7■■□□□ 1.55
KRT40Q6A162 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KRT40Q6A162 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
KRT40Q6A162 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC24.7■■□□□ 1.54
KRT40Q6A162 AC034268.1-201ENST00000441047 882 ntBASIC24.7■■□□□ 1.54
KRT40Q6A162 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KRT40Q6A162 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC24.7■■□□□ 1.54
KRT40Q6A162 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KRT40Q6A162 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC24.7■■□□□ 1.54
KRT40Q6A162 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC24.7■■□□□ 1.54
KRT40Q6A162 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
KRT40Q6A162 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
KRT40Q6A162 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC24.69■■□□□ 1.54
KRT40Q6A162 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
KRT40Q6A162 LHPP-203ENST00000392757 840 ntTSL 3 BASIC24.69■■□□□ 1.54
KRT40Q6A162 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC24.69■■□□□ 1.54
KRT40Q6A162 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC24.69■■□□□ 1.54
KRT40Q6A162 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC24.69■■□□□ 1.54
KRT40Q6A162 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC24.69■■□□□ 1.54
KRT40Q6A162 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC24.69■■□□□ 1.54
KRT40Q6A162 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC24.69■■□□□ 1.54
KRT40Q6A162 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
KRT40Q6A162 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
KRT40Q6A162 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.69■■□□□ 1.54
KRT40Q6A162 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
KRT40Q6A162 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
KRT40Q6A162 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC24.68■■□□□ 1.54
KRT40Q6A162 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC24.68■■□□□ 1.54
KRT40Q6A162 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC24.68■■□□□ 1.54
KRT40Q6A162 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC24.68■■□□□ 1.54
KRT40Q6A162 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
KRT40Q6A162 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
KRT40Q6A162 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
KRT40Q6A162 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KRT40Q6A162 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KRT40Q6A162 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KRT40Q6A162 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC24.67■■□□□ 1.54
KRT40Q6A162 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC24.67■■□□□ 1.54
KRT40Q6A162 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC24.67■■□□□ 1.54
KRT40Q6A162 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC24.67■■□□□ 1.54
KRT40Q6A162 AC105233.4-201ENST00000642045 216 ntBASIC24.67■■□□□ 1.54
KRT40Q6A162 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
KRT40Q6A162 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC24.67■■□□□ 1.54
KRT40Q6A162 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
KRT40Q6A162 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC24.67■■□□□ 1.54
KRT40Q6A162 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC24.66■■□□□ 1.54
KRT40Q6A162 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
KRT40Q6A162 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
KRT40Q6A162 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
KRT40Q6A162 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
KRT40Q6A162 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC24.66■■□□□ 1.54
KRT40Q6A162 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
KRT40Q6A162 MIR572-201ENST00000384983 95 ntBASIC24.66■■□□□ 1.54
KRT40Q6A162 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
KRT40Q6A162 AC004911.1-201ENST00000416316 871 ntBASIC24.66■■□□□ 1.54
KRT40Q6A162 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms