Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.21■□□□□ 0.99
LRRK1Q38SD2 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
LRRK1Q38SD2 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
LRRK1Q38SD2 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LRRK1Q38SD2 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LRRK1Q38SD2 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRK1Q38SD2 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LRRK1Q38SD2 KRT18P20-201ENST00000548986 1279 ntBASIC21.2■□□□□ 0.98
LRRK1Q38SD2 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.2■□□□□ 0.98
LRRK1Q38SD2 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.2■□□□□ 0.98
LRRK1Q38SD2 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.2■□□□□ 0.98
LRRK1Q38SD2 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRK1Q38SD2 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 KRT18P11-201ENST00000435214 1283 ntBASIC21.19■□□□□ 0.98
LRRK1Q38SD2 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRK1Q38SD2 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 AC010542.4-201ENST00000563151 1910 ntBASIC21.18■□□□□ 0.98
LRRK1Q38SD2 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 AC026185.1-201ENST00000445748 174 ntBASIC21.18■□□□□ 0.98
LRRK1Q38SD2 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 AC003102.1-202ENST00000563394 1796 ntBASIC21.18■□□□□ 0.98
LRRK1Q38SD2 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.18■□□□□ 0.98
LRRK1Q38SD2 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 CDCA4P2-201ENST00000441182 718 ntBASIC21.17■□□□□ 0.98
LRRK1Q38SD2 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRRK1Q38SD2 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 BID-214ENST00000617586 542 ntTSL 5 BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 AC133561.1-201ENST00000568600 2415 ntBASIC21.16■□□□□ 0.98
LRRK1Q38SD2 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.16■□□□□ 0.98
LRRK1Q38SD2 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.15■□□□□ 0.98
LRRK1Q38SD2 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.15■□□□□ 0.98
LRRK1Q38SD2 AC012676.1-201ENST00000574705 1949 ntBASIC21.15■□□□□ 0.98
LRRK1Q38SD2 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRK1Q38SD2 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRK1Q38SD2 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LRRK1Q38SD2 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.15■□□□□ 0.98
LRRK1Q38SD2 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
LRRK1Q38SD2 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.15■□□□□ 0.98
LRRK1Q38SD2 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.15■□□□□ 0.98
LRRK1Q38SD2 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRK1Q38SD2 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRK1Q38SD2 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRK1Q38SD2 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRK1Q38SD2 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms