Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AC008694.1-202ENST00000636953 945 ntBASIC23.78■■□□□ 1.4
NKX3-2P78367 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.78■■□□□ 1.4
NKX3-2P78367 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.78■■□□□ 1.4
NKX3-2P78367 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
NKX3-2P78367 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC23.78■■□□□ 1.4
NKX3-2P78367 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NKX3-2P78367 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.77■■□□□ 1.4
NKX3-2P78367 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.77■■□□□ 1.4
NKX3-2P78367 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
NKX3-2P78367 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
NKX3-2P78367 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.77■■□□□ 1.4
NKX3-2P78367 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC23.77■■□□□ 1.4
NKX3-2P78367 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC23.77■■□□□ 1.4
NKX3-2P78367 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC23.77■■□□□ 1.4
NKX3-2P78367 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.77■■□□□ 1.4
NKX3-2P78367 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NKX3-2P78367 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NKX3-2P78367 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NKX3-2P78367 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NKX3-2P78367 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NKX3-2P78367 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
NKX3-2P78367 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.76■■□□□ 1.39
NKX3-2P78367 PRORSD1P-201ENST00000295112 541 ntBASIC23.76■■□□□ 1.39
NKX3-2P78367 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NKX3-2P78367 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
NKX3-2P78367 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
NKX3-2P78367 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NKX3-2P78367 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.76■■□□□ 1.39
NKX3-2P78367 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC23.76■■□□□ 1.39
NKX3-2P78367 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
NKX3-2P78367 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NKX3-2P78367 AC083880.1-201ENST00000608266 535 ntBASIC23.76■■□□□ 1.39
NKX3-2P78367 AC243732.1-201ENST00000612648 864 ntBASIC23.76■■□□□ 1.39
NKX3-2P78367 AC008175.2-201ENST00000612840 297 ntBASIC23.76■■□□□ 1.39
NKX3-2P78367 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
NKX3-2P78367 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NKX3-2P78367 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC23.76■■□□□ 1.39
NKX3-2P78367 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NKX3-2P78367 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NKX3-2P78367 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX3-2P78367 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.75■■□□□ 1.39
NKX3-2P78367 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX3-2P78367 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.75■■□□□ 1.39
NKX3-2P78367 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC23.75■■□□□ 1.39
NKX3-2P78367 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NKX3-2P78367 RNA5SP413-201ENST00000516373 109 ntBASIC23.75■■□□□ 1.39
NKX3-2P78367 AC120498.10-201ENST00000621827 505 ntBASIC23.75■■□□□ 1.39
NKX3-2P78367 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX3-2P78367 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
NKX3-2P78367 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX3-2P78367 KRT16P2-201ENST00000414673 1423 ntBASIC23.75■■□□□ 1.39
NKX3-2P78367 RBM17P2-201ENST00000616397 1405 ntBASIC23.75■■□□□ 1.39
NKX3-2P78367 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NKX3-2P78367 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX3-2P78367 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC23.74■■□□□ 1.39
NKX3-2P78367 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.74■■□□□ 1.39
NKX3-2P78367 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.74■■□□□ 1.39
NKX3-2P78367 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.74■■□□□ 1.39
NKX3-2P78367 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.74■■□□□ 1.39
NKX3-2P78367 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.74■■□□□ 1.39
NKX3-2P78367 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NKX3-2P78367 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX3-2P78367 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX3-2P78367 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.74■■□□□ 1.39
NKX3-2P78367 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.73■■□□□ 1.39
NKX3-2P78367 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
NKX3-2P78367 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
NKX3-2P78367 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NKX3-2P78367 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.73■■□□□ 1.39
NKX3-2P78367 DET1-205ENST00000558413 583 ntTSL 4 BASIC23.73■■□□□ 1.39
NKX3-2P78367 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.73■■□□□ 1.39
NKX3-2P78367 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX3-2P78367 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
NKX3-2P78367 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX3-2P78367 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX3-2P78367 AC137767.1-201ENST00000602918 1920 ntBASIC23.72■■□□□ 1.39
NKX3-2P78367 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC23.72■■□□□ 1.39
NKX3-2P78367 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NKX3-2P78367 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NKX3-2P78367 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NKX3-2P78367 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NKX3-2P78367 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NKX3-2P78367 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.72■■□□□ 1.39
NKX3-2P78367 KRT18P29-201ENST00000397031 1267 ntBASIC23.72■■□□□ 1.39
NKX3-2P78367 BX276092.2-201ENST00000417668 665 ntBASIC23.72■■□□□ 1.39
NKX3-2P78367 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.72■■□□□ 1.39
NKX3-2P78367 AC093827.2-201ENST00000512654 315 ntBASIC23.72■■□□□ 1.39
NKX3-2P78367 ADM-205ENST00000528544 586 ntTSL 2 BASIC23.72■■□□□ 1.39
NKX3-2P78367 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC23.72■■□□□ 1.39
NKX3-2P78367 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.72■■□□□ 1.39
NKX3-2P78367 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
NKX3-2P78367 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
NKX3-2P78367 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
NKX3-2P78367 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC23.71■■□□□ 1.39
NKX3-2P78367 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX3-2P78367 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX3-2P78367 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX3-2P78367 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.71■■□□□ 1.39
NKX3-2P78367 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.71■■□□□ 1.39
NKX3-2P78367 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms