Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 UQCRFS1P1-201ENST00000435169 820 ntBASIC25.12■■□□□ 1.61
SHMT1P34896 EMC9-206ENST00000560403 872 ntTSL 2 BASIC25.12■■□□□ 1.61
SHMT1P34896 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC25.12■■□□□ 1.61
SHMT1P34896 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
SHMT1P34896 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC25.12■■□□□ 1.61
SHMT1P34896 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHMT1P34896 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC25.12■■□□□ 1.61
SHMT1P34896 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SHMT1P34896 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
SHMT1P34896 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHMT1P34896 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHMT1P34896 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHMT1P34896 AC080038.3-201ENST00000623346 1952 ntBASIC25.11■■□□□ 1.61
SHMT1P34896 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC25.11■■□□□ 1.61
SHMT1P34896 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC25.11■■□□□ 1.61
SHMT1P34896 SLC7A5P2-201ENST00000553010 536 ntBASIC25.11■■□□□ 1.61
SHMT1P34896 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC25.11■■□□□ 1.61
SHMT1P34896 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC25.11■■□□□ 1.61
SHMT1P34896 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC25.11■■□□□ 1.61
SHMT1P34896 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC25.11■■□□□ 1.61
SHMT1P34896 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC25.11■■□□□ 1.61
SHMT1P34896 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC25.11■■□□□ 1.61
SHMT1P34896 AL109923.1-201ENST00000618799 583 ntBASIC25.11■■□□□ 1.61
SHMT1P34896 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHMT1P34896 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
SHMT1P34896 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHMT1P34896 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHMT1P34896 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SHMT1P34896 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SHMT1P34896 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHMT1P34896 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHMT1P34896 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SHMT1P34896 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHMT1P34896 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC25.1■■□□□ 1.61
SHMT1P34896 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC25.1■■□□□ 1.61
SHMT1P34896 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC25.1■■□□□ 1.61
SHMT1P34896 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC25.1■■□□□ 1.61
SHMT1P34896 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC25.1■■□□□ 1.61
SHMT1P34896 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHMT1P34896 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC25.1■■□□□ 1.61
SHMT1P34896 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC25.09■■□□□ 1.61
SHMT1P34896 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC25.09■■□□□ 1.61
SHMT1P34896 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
SHMT1P34896 AC007322.1-201ENST00000426983 750 ntBASIC25.09■■□□□ 1.61
SHMT1P34896 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
SHMT1P34896 AC010536.3-201ENST00000620306 533 ntBASIC25.09■■□□□ 1.61
SHMT1P34896 PARP1-210ENST00000629232 477 ntTSL 5 BASIC25.09■■□□□ 1.61
SHMT1P34896 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SHMT1P34896 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25.09■■□□□ 1.61
SHMT1P34896 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SHMT1P34896 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC25.09■■□□□ 1.61
SHMT1P34896 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC25.09■■□□□ 1.61
SHMT1P34896 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
SHMT1P34896 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SHMT1P34896 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
SHMT1P34896 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
SHMT1P34896 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SHMT1P34896 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC25.08■■□□□ 1.61
SHMT1P34896 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC25.08■■□□□ 1.61
SHMT1P34896 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC25.08■■□□□ 1.61
SHMT1P34896 AC005181.1-201ENST00000604782 1256 ntBASIC25.08■■□□□ 1.61
SHMT1P34896 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC25.08■■□□□ 1.61
SHMT1P34896 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
SHMT1P34896 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
SHMT1P34896 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SHMT1P34896 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
SHMT1P34896 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC25.08■■□□□ 1.6
SHMT1P34896 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SHMT1P34896 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SHMT1P34896 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC25.07■■□□□ 1.6
SHMT1P34896 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
SHMT1P34896 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SHMT1P34896 GPX1P1-201ENST00000388829 606 ntBASIC25.07■■□□□ 1.6
SHMT1P34896 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC25.07■■□□□ 1.6
SHMT1P34896 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC25.07■■□□□ 1.6
SHMT1P34896 RNF146-206ENST00000480444 843 ntTSL 2 BASIC25.07■■□□□ 1.6
SHMT1P34896 SLC7A5P1-201ENST00000568957 537 ntBASIC25.07■■□□□ 1.6
SHMT1P34896 GAMT-205ENST00000640762 751 ntTSL 5 BASIC25.07■■□□□ 1.6
SHMT1P34896 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
SHMT1P34896 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC25.07■■□□□ 1.6
SHMT1P34896 AC127496.7-201ENST00000625110 1798 ntBASIC25.07■■□□□ 1.6
SHMT1P34896 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SHMT1P34896 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
SHMT1P34896 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
SHMT1P34896 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SHMT1P34896 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SHMT1P34896 GUSBP6-202ENST00000438529 1198 ntBASIC25.05■■□□□ 1.6
SHMT1P34896 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC25.05■■□□□ 1.6
SHMT1P34896 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC25.05■■□□□ 1.6
SHMT1P34896 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SHMT1P34896 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
SHMT1P34896 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SHMT1P34896 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SHMT1P34896 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
SHMT1P34896 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.04■■□□□ 1.6
SHMT1P34896 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
SHMT1P34896 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SHMT1P34896 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SHMT1P34896 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SHMT1P34896 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms