Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC30.54■■■□□ 2.48
NPHP4O75161 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
NPHP4O75161 FAM197Y4-202ENST00000622692 608 ntBASIC30.54■■■□□ 2.48
NPHP4O75161 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
NPHP4O75161 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC30.54■■■□□ 2.48
NPHP4O75161 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
NPHP4O75161 AP004607.7-201ENST00000527152 1677 ntBASIC30.53■■■□□ 2.48
NPHP4O75161 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
NPHP4O75161 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
NPHP4O75161 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC30.53■■■□□ 2.48
NPHP4O75161 FGF8-207ENST00000618991 856 ntTSL 3 BASIC30.53■■■□□ 2.48
NPHP4O75161 REXO1L12P-201ENST00000622156 912 ntBASIC30.53■■■□□ 2.48
NPHP4O75161 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
NPHP4O75161 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC30.52■■■□□ 2.48
NPHP4O75161 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC30.52■■■□□ 2.48
NPHP4O75161 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
NPHP4O75161 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
NPHP4O75161 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC30.52■■■□□ 2.48
NPHP4O75161 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC30.52■■■□□ 2.48
NPHP4O75161 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
NPHP4O75161 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
NPHP4O75161 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC30.52■■■□□ 2.48
NPHP4O75161 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC30.52■■■□□ 2.48
NPHP4O75161 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC30.52■■■□□ 2.48
NPHP4O75161 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC30.52■■■□□ 2.48
NPHP4O75161 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
NPHP4O75161 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
NPHP4O75161 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
NPHP4O75161 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
NPHP4O75161 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.47
NPHP4O75161 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
NPHP4O75161 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
NPHP4O75161 KRT18P21-201ENST00000515767 1272 ntBASIC30.51■■■□□ 2.47
NPHP4O75161 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC30.51■■■□□ 2.47
NPHP4O75161 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
NPHP4O75161 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
NPHP4O75161 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
NPHP4O75161 C1QBPP2-201ENST00000528754 825 ntBASIC30.5■■■□□ 2.47
NPHP4O75161 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC30.5■■■□□ 2.47
NPHP4O75161 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
NPHP4O75161 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
NPHP4O75161 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC30.5■■■□□ 2.47
NPHP4O75161 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC30.5■■■□□ 2.47
NPHP4O75161 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC30.5■■■□□ 2.47
NPHP4O75161 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC30.5■■■□□ 2.47
NPHP4O75161 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
NPHP4O75161 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
NPHP4O75161 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
NPHP4O75161 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC30.49■■■□□ 2.47
NPHP4O75161 AC060766.5-201ENST00000590539 871 ntBASIC30.49■■■□□ 2.47
NPHP4O75161 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
NPHP4O75161 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC30.49■■■□□ 2.47
NPHP4O75161 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC30.49■■■□□ 2.47
NPHP4O75161 RBM17P2-201ENST00000616397 1405 ntBASIC30.49■■■□□ 2.47
NPHP4O75161 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP4O75161 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP4O75161 H19-210ENST00000439725 1929 ntTSL 2 BASIC30.48■■■□□ 2.47
NPHP4O75161 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC30.48■■■□□ 2.47
NPHP4O75161 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC30.48■■■□□ 2.47
NPHP4O75161 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP4O75161 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC30.48■■■□□ 2.47
NPHP4O75161 CYP2T3P-201ENST00000601990 817 ntBASIC30.48■■■□□ 2.47
NPHP4O75161 AL591742.1-201ENST00000604433 565 ntBASIC30.48■■■□□ 2.47
NPHP4O75161 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC30.48■■■□□ 2.47
NPHP4O75161 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP4O75161 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP4O75161 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC30.48■■■□□ 2.47
NPHP4O75161 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP4O75161 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP4O75161 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP4O75161 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP4O75161 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC30.48■■■□□ 2.47
NPHP4O75161 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC30.48■■■□□ 2.47
NPHP4O75161 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP4O75161 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP4O75161 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP4O75161 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC30.47■■■□□ 2.47
NPHP4O75161 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP4O75161 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC30.47■■■□□ 2.47
NPHP4O75161 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP4O75161 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP4O75161 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP4O75161 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC30.47■■■□□ 2.47
NPHP4O75161 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP4O75161 AC079089.2-201ENST00000531211 1277 ntBASIC30.47■■■□□ 2.47
NPHP4O75161 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC30.47■■■□□ 2.47
NPHP4O75161 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
NPHP4O75161 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
NPHP4O75161 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
NPHP4O75161 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
NPHP4O75161 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC30.46■■■□□ 2.47
NPHP4O75161 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC30.46■■■□□ 2.47
NPHP4O75161 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
NPHP4O75161 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC30.46■■■□□ 2.47
NPHP4O75161 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC30.46■■■□□ 2.47
NPHP4O75161 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC30.46■■■□□ 2.47
NPHP4O75161 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC30.46■■■□□ 2.47
NPHP4O75161 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC30.45■■■□□ 2.46
NPHP4O75161 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC30.45■■■□□ 2.46
NPHP4O75161 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC30.45■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms