Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC3O15379 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC3O15379 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.75■□□□□ 0.91
HDAC3O15379 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
HDAC3O15379 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC3O15379 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.75■□□□□ 0.91
HDAC3O15379 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC3O15379 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.75■□□□□ 0.91
HDAC3O15379 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC3O15379 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC3O15379 AC239859.2-201ENST00000444165 318 ntBASIC20.75■□□□□ 0.91
HDAC3O15379 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
HDAC3O15379 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC3O15379 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.75■□□□□ 0.91
HDAC3O15379 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC3O15379 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
HDAC3O15379 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC3O15379 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
HDAC3O15379 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC3O15379 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HDAC3O15379 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.75■□□□□ 0.91
HDAC3O15379 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.74■□□□□ 0.91
HDAC3O15379 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HDAC3O15379 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HDAC3O15379 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.74■□□□□ 0.91
HDAC3O15379 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.74■□□□□ 0.91
HDAC3O15379 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.74■□□□□ 0.91
HDAC3O15379 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HDAC3O15379 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HDAC3O15379 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.74■□□□□ 0.91
HDAC3O15379 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.74■□□□□ 0.91
HDAC3O15379 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HDAC3O15379 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
HDAC3O15379 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
HDAC3O15379 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.73■□□□□ 0.91
HDAC3O15379 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.73■□□□□ 0.91
HDAC3O15379 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
HDAC3O15379 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.73■□□□□ 0.91
HDAC3O15379 AC006455.2-201ENST00000429931 906 ntBASIC20.73■□□□□ 0.91
HDAC3O15379 MIR6724-1-201ENST00000616420 92 ntBASIC20.73■□□□□ 0.91
HDAC3O15379 MIR6724-2-201ENST00000616483 92 ntBASIC20.73■□□□□ 0.91
HDAC3O15379 MIR6724-4-201ENST00000617390 92 ntBASIC20.73■□□□□ 0.91
HDAC3O15379 MIR6724-3-201ENST00000622482 92 ntBASIC20.73■□□□□ 0.91
HDAC3O15379 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.73■□□□□ 0.91
HDAC3O15379 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDAC3O15379 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDAC3O15379 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.73■□□□□ 0.91
HDAC3O15379 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.73■□□□□ 0.91
HDAC3O15379 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDAC3O15379 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.73■□□□□ 0.91
HDAC3O15379 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.72■□□□□ 0.91
HDAC3O15379 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.72■□□□□ 0.91
HDAC3O15379 AL049796.1-201ENST00000565336 1766 ntBASIC20.72■□□□□ 0.91
HDAC3O15379 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
HDAC3O15379 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
HDAC3O15379 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC3O15379 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC3O15379 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC3O15379 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC3O15379 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC3O15379 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.72■□□□□ 0.91
HDAC3O15379 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC3O15379 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC3O15379 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC3O15379 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC3O15379 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC3O15379 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC3O15379 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC3O15379 LINC01006-201ENST00000333319 2292 ntBASIC20.71■□□□□ 0.91
HDAC3O15379 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.71■□□□□ 0.91
HDAC3O15379 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC3O15379 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.71■□□□□ 0.91
HDAC3O15379 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC3O15379 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.71■□□□□ 0.91
HDAC3O15379 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.71■□□□□ 0.91
HDAC3O15379 AC087239.1-201ENST00000622671 572 ntBASIC20.71■□□□□ 0.91
HDAC3O15379 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.71■□□□□ 0.91
HDAC3O15379 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
HDAC3O15379 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC3O15379 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.71■□□□□ 0.91
HDAC3O15379 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC3O15379 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
HDAC3O15379 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC3O15379 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC3O15379 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC3O15379 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC3O15379 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC3O15379 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC3O15379 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC3O15379 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.7■□□□□ 0.9
HDAC3O15379 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC3O15379 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
HDAC3O15379 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.7■□□□□ 0.9
HDAC3O15379 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC3O15379 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC3O15379 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.69■□□□□ 0.9
HDAC3O15379 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC3O15379 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HDAC3O15379 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC3O15379 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms